Variant report

Variant	rs73034142
Chromosome Location	chr19:37061822-37061823
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36979193..36981748-chr19:37061672..37065426,4	K562	blood:
2	chr19:37047289..37050700-chr19:37061573..37063531,3	K562	blood:
3	chr19:36940091..36943076-chr19:37061156..37065481,3	K562	blood:
4	chr19:37018711..37023188-chr19:37060299..37065354,5	K562	blood:

Variant related genes	Relation type
ENSG00000186017	Chromatin interaction
ENSG00000254004	Chromatin interaction
ENSG00000267309	Chromatin interaction
ENSG00000228629	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs17707014	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707021	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17707033	0.87[ASN][1000 genomes]
rs4806328	0.83[AMR][1000 genomes]
rs4806333	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4806340	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4806344	0.82[EUR][1000 genomes]
rs55634974	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55743839	0.83[AMR][1000 genomes]
rs55801623	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55830504	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55880628	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55933007	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56054915	0.87[AMR][1000 genomes]
rs56075402	0.83[AMR][1000 genomes]
rs56183102	0.81[AMR][1000 genomes]
rs56246998	0.83[AMR][1000 genomes]
rs57126710	0.87[ASN][1000 genomes]
rs7249099	0.82[AMR][1000 genomes]
rs7257899	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7259057	0.81[AMR][1000 genomes]
rs73032465	0.93[AMR][1000 genomes]
rs73032484	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032489	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73032491	0.87[ASN][1000 genomes]
rs73032502	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034106	0.87[ASN][1000 genomes]
rs73034109	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73034176	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73036297	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73038105	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73039907	0.82[EUR][1000 genomes]
rs73049817	0.83[AMR][1000 genomes]
rs73049826	0.83[AMR][1000 genomes]
rs8100340	0.94[AMR][1000 genomes]
rs8102097	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8102474	0.87[ASN][1000 genomes]
rs8104893	0.83[AMR][1000 genomes]
rs8106144	0.87[ASN][1000 genomes]
rs8110140	0.81[AMR][1000 genomes]
rs8111192	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3334779	chr19:37050161-37076919	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37023400-37062000	ZNF genes & repeats	Fetal Brain Female	brain
2	chr19:37023400-37063000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr19:37025600-37062800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr19:37034000-37063000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:37048400-37062800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr19:37050400-37062600	Weak transcription	Fetal Heart	heart
7	chr19:37052800-37063000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr19:37052800-37063200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr19:37053400-37063000	Weak transcription	Stomach Mucosa	stomach
10	chr19:37054000-37063200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr19:37054200-37063000	Weak transcription	Osteobl	bone
12	chr19:37054200-37063800	Weak transcription	Gastric	stomach
13	chr19:37054400-37063800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr19:37055600-37062000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr19:37055600-37062800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:37055600-37063000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr19:37056000-37063400	ZNF genes & repeats	A549	lung
18	chr19:37056200-37062800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:37056200-37063000	Weak transcription	Brain Substantia Nigra	brain
20	chr19:37056400-37063000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr19:37057200-37062600	Weak transcription	NHEK	skin
22	chr19:37057200-37062800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr19:37057200-37063000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr19:37057400-37063200	Weak transcription	HUVEC	blood vessel
25	chr19:37057600-37062800	Weak transcription	Brain Angular Gyrus	brain
26	chr19:37057800-37062400	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr19:37058000-37063000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr19:37058400-37062800	Weak transcription	HMEC	breast
29	chr19:37058800-37062400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr19:37059000-37062600	Weak transcription	HepG2	liver
31	chr19:37059200-37062800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr19:37059600-37062000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr19:37059800-37062800	Genic enhancers	Dnd41	blood
34	chr19:37060000-37062800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr19:37060200-37062800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr19:37060200-37062800	Weak transcription	Fetal Kidney	kidney
37	chr19:37060200-37063000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr19:37060200-37063000	Weak transcription	Fetal Brain Male	brain
39	chr19:37060200-37063200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr19:37060400-37062800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr19:37060800-37062400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr19:37060800-37063200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr19:37060800-37063400	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr19:37061000-37062400	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr19:37061000-37062600	Strong transcription	Primary T helper cells PMA-I stimulated	--
46	chr19:37061000-37062800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr19:37061000-37062800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr19:37061000-37062800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr19:37061000-37062800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr19:37061000-37062800	Weak transcription	Brain Hippocampus Middle	brain

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