Variant report

Variant	rs73038105
Chromosome Location	chr19:37158528-37158529
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:37129696..37132146-chr19:37158432..37159959,2	K562	blood:
2	chr19:37158057..37159719-chr19:37162849..37165565,2	MCF-7	breast:
3	chr19:37157483..37161085-chr19:37175435..37180024,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197808	Chromatin interaction
ENSG00000189042	Chromatin interaction
ENSG00000225975	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17707014	0.85[AMR][1000 genomes]
rs17707021	0.81[AMR][1000 genomes]
rs4806333	0.81[AMR][1000 genomes]
rs4806340	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4806344	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55634974	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55830504	0.81[AMR][1000 genomes]
rs55880628	0.83[AMR][1000 genomes]
rs55933007	0.81[AMR][1000 genomes]
rs7257899	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73032465	0.85[AMR][1000 genomes]
rs73032484	0.81[AMR][1000 genomes]
rs73032489	0.81[AMR][1000 genomes]
rs73032502	0.81[AMR][1000 genomes]
rs73034109	0.81[AMR][1000 genomes]
rs73034142	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73034176	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73036297	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73039907	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8100340	0.81[AMR][1000 genomes]
rs8102097	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064851	chr19:36910259-37689721	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1065698	chr19:36916796-37690124	Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv543999	chr19:36916796-37690124	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv529817	chr19:36930549-37654062	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv833817	chr19:36978852-37195695	ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
6	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
7	esv3492171	chr19:37122012-37190210	Weak transcription Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
8	esv3492172	chr19:37122562-37190060	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
9	esv3492173	chr19:37122562-37190060	Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	n/a
10	nsv469794	chr19:37129858-37310257	Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv482392	chr19:37129858-37310257	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv3420176	chr19:37130161-37207917	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	n/a
13	nsv1061250	chr19:37134068-37188771	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	n/a
14	esv34384	chr19:37134068-37330613	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv817833	chr19:37146694-37357289	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37156600-37158600	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr19:37156600-37158600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:37156600-37158600	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr19:37156600-37158600	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr19:37156600-37158600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr19:37156600-37158600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr19:37156600-37158600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr19:37156600-37158600	Active TSS	Muscle Satellite Cultured Cells	--
9	chr19:37156600-37158600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr19:37156600-37158600	Active TSS	Colon Smooth Muscle	Colon
11	chr19:37156600-37158600	Active TSS	HSMM	muscle
12	chr19:37156600-37158600	Active TSS	NHDF-Ad	bronchial
13	chr19:37156600-37158600	Active TSS	NHLF	lung
14	chr19:37156600-37159400	Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr19:37156600-37159400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr19:37156600-37159600	Active TSS	Rectal Smooth Muscle	rectum
17	chr19:37156600-37160200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr19:37156800-37158600	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr19:37156800-37158600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
20	chr19:37156800-37158600	Active TSS	Fetal Brain Female	brain
21	chr19:37156800-37158600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr19:37156800-37158600	Active TSS	Psoas Muscle	Psoas
23	chr19:37156800-37158600	Active TSS	HUVEC	blood vessel
24	chr19:37156800-37158600	Active TSS	NH-A	brain
25	chr19:37156800-37158800	Active TSS	Fetal Intestine Large	intestine
26	chr19:37156800-37159000	Active TSS	Fetal Intestine Small	intestine
27	chr19:37156800-37159200	Active TSS	H9 Cell Line	embryonic stem cell
28	chr19:37156800-37159200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr19:37156800-37159600	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr19:37157000-37158600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr19:37157000-37158600	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr19:37157000-37158600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr19:37157000-37158600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr19:37157000-37158600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr19:37157000-37158600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr19:37157000-37158600	Active TSS	Brain Angular Gyrus	brain
37	chr19:37157000-37158600	Active TSS	Fetal Kidney	kidney
38	chr19:37157000-37158600	Active TSS	Left Ventricle	heart
39	chr19:37157000-37158600	Active TSS	Ovary	ovary
40	chr19:37157000-37158600	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr19:37157000-37158600	Active TSS	HMEC	breast
42	chr19:37157000-37158600	Active TSS	NHEK	skin
43	chr19:37157000-37158800	Active TSS	Pancreas	Pancrea
44	chr19:37157000-37158800	Active TSS	Right Atrium	heart
45	chr19:37157000-37159000	Active TSS	H1 Cell Line	embryonic stem cell
46	chr19:37157000-37159000	Active TSS	Primary T cells from cord blood	blood
47	chr19:37157000-37159000	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr19:37157000-37159000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
49	chr19:37157000-37159000	Active TSS	A549	lung
50	chr19:37157000-37159400	Active TSS	HSMMtube	muscle

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