Variant report

Variant	rs73034879
Chromosome Location	chr2:190075115-190075116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190074579..190076225-chr2:190085427..190087119,2	MCF-7	breast:
2	chr2:190075089..190077923-chr2:190078136..190079757,2	MCF-7	breast:
3	chr2:190070733..190073689-chr2:190074738..190076938,2	MCF-7	breast:
4	chr2:190068274..190071014-chr2:190073430..190076156,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73034833	1.00[AFR][1000 genomes]
rs73036533	0.83[AFR][1000 genomes]
rs73051216	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190072600-190076000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:190072800-190075800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:190073000-190075400	Enhancers	Hela-S3	cervix
4	chr2:190073000-190077000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:190073000-190077000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:190073200-190075400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:190073200-190075400	Enhancers	Fetal Stomach	stomach
8	chr2:190073200-190075400	Enhancers	HSMM	muscle
9	chr2:190073200-190075800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr2:190073200-190077000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr2:190073400-190077000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:190073600-190075400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:190073600-190076600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:190073800-190075400	Weak transcription	Aorta	Aorta
15	chr2:190073800-190075400	Weak transcription	Ovary	ovary
16	chr2:190073800-190075400	Weak transcription	K562	blood
17	chr2:190073800-190075800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:190074000-190075800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr2:190074000-190076000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:190074000-190079400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:190074200-190076000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr2:190074200-190076000	Enhancers	Rectal Smooth Muscle	rectum
23	chr2:190074200-190076200	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr2:190074400-190075800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr2:190074400-190076000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr2:190074600-190075400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr2:190074600-190075800	Enhancers	Brain Hippocampus Middle	brain
28	chr2:190074600-190076000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr2:190074600-190076600	Enhancers	HMEC	breast
30	chr2:190074800-190075200	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr2:190074800-190075200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:190074800-190075200	Flanking Active TSS	Fetal Lung	lung
33	chr2:190074800-190075200	Enhancers	NHEK	skin
34	chr2:190074800-190075400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr2:190074800-190075400	Active TSS	Colon Smooth Muscle	Colon
36	chr2:190074800-190075800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr2:190074800-190076000	Active TSS	Adipose Nuclei	Adipose
38	chr2:190074800-190076000	Flanking Active TSS	HUVEC	blood vessel
39	chr2:190074800-190076000	Active TSS	NHLF	lung
40	chr2:190075000-190075200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr2:190075000-190075200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr2:190075000-190075200	Enhancers	Muscle Satellite Cultured Cells	--
43	chr2:190075000-190075200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr2:190075000-190075400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr2:190075000-190075400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr2:190075000-190075400	Enhancers	HSMMtube	muscle
47	chr2:190075000-190075400	Active TSS	NH-A	brain
48	chr2:190075000-190075400	Active TSS	Osteobl	bone
49	chr2:190075000-190075600	Active TSS	NHDF-Ad	bronchial
50	chr2:190075000-190075800	Active TSS	ES-WA7 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links