Variant report

Variant	rs73036533
Chromosome Location	chr2:190123610-190123611
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs73034833	0.83[AFR][1000 genomes]
rs73034879	0.83[AFR][1000 genomes]
rs73036538	0.86[AFR][1000 genomes]
rs73051216	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1014747	chr2:190097979-190132854	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875614	chr2:190110841-190254758	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190115600-190126200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr2:190119600-190126400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:190119800-190124600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:190119800-190125000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr2:190119800-190125000	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:190119800-190125000	Weak transcription	NH-A	brain
7	chr2:190119800-190125200	Weak transcription	Fetal Lung	lung
8	chr2:190119800-190127800	Weak transcription	Aorta	Aorta
9	chr2:190120000-190125000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:190120000-190125000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:190120000-190125000	Weak transcription	Osteobl	bone
12	chr2:190120000-190125400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:190120000-190126000	Weak transcription	NHLF	lung
14	chr2:190120200-190125000	Weak transcription	A549	lung
15	chr2:190120200-190125000	Weak transcription	NHDF-Ad	bronchial
16	chr2:190120400-190125000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:190123200-190132200	Weak transcription	Pancreas	Pancrea
18	chr2:190123600-190124000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:190123600-190124000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr2:190123600-190124200	Enhancers	Rectal Smooth Muscle	rectum
21	chr2:190123600-190129600	Weak transcription	Psoas Muscle	Psoas

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