Variant report

Variant	rs7303682
Chromosome Location	chr12:103980385-103980386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr12:103979688-103980421	A549	lung:	n/a	n/a
2	CTCF	chr12:103979847-103980405	MCF-7	breast:	n/a	n/a
3	RAD21	chr12:103979907-103980423	HCT-116	colon:	n/a	n/a
4	CTCF	chr12:103980360-103980510	GM12867	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:103979608..103980912-chr12:104026115..104027121,4	MCF-7	breast:
2	chr12:103978811..103980494-chr12:103984824..103986787,2	K562	blood:
3	chr12:103979507..103980822-chr12:104025776..104026985,11	MCF-7	breast:

Variant related genes	Relation type
STAB2	TF binding region
ENSG00000212594	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10454506	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1582880	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582881	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1991436	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];0.86[TSI][hapmap]
rs4764967	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6539083	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6539084	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs703598	0.84[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703599	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703600	0.96[CEU][hapmap];0.86[CHB][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703601	0.96[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703602	0.96[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703603	0.96[CEU][hapmap];0.86[CHB][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703604	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs703606	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs703610	0.82[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap]
rs7295399	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7307320	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7312553	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs7958280	0.81[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7303682	CHST11	cis	parietal	SCAN
rs7303682	ZC3H8	trans	cerebellum	SCAN
rs7303682	STAB2	cis	Esophagus Mucosa	GTEx
rs7303682	STAB2	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
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