Variant report

Variant	rs10454506
Chromosome Location	chr12:103972207-103972208
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAB2-1	chr12:103972097-103972688	XLOC_009859
2	lnc-STAB2-1	chr12:103972097-103972385	XLOC_009859
3	lnc-STAB2-1	chr12:103972097-103972694	XLOC_009859
4	lnc-STAB2-1	chr12:103972097-103972383	NONHSAT030381
5	lnc-STAB2-1	chr12:103972097-103972383	NONHSAT030382

Extended variants
information (count: 23 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10745971	0.96[ASN][1000 genomes]
rs10745972	0.92[ASN][1000 genomes]
rs10861040	0.96[ASN][1000 genomes]
rs1346412	0.96[ASN][1000 genomes]
rs1582880	1.00[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1582881	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1991436	1.00[CEU][hapmap]
rs4764967	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539083	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6539084	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs703598	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs703599	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs703600	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs703601	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs703602	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs703603	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs703604	0.88[EUR][1000 genomes]
rs703606	0.88[EUR][1000 genomes]
rs703610	0.86[CEU][hapmap]
rs7295399	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7303682	0.96[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7307320	1.00[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7958280	0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10454506	STAB2	cis	Thyroid	GTEx
rs10454506	STAB2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103969800-103973200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:103969800-103973200	Weak transcription	HMEC	breast
3	chr12:103969800-103973200	Weak transcription	NHEK	skin
4	chr12:103969800-103973400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:103969800-103973400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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