Variant report

Variant	rs1346412
Chromosome Location	chr12:103967728-103967729
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103964010..103966292-chr12:103967162..103970095,2	MCF-7	breast:
2	chr12:103954527..103956110-chr12:103966376..103969206,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10454506	0.96[ASN][1000 genomes]
rs10745971	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745972	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10745973	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10745974	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10778263	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10861040	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10861041	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1346411	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1582880	0.86[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1582881	0.87[CHD][hapmap];0.91[GIH][hapmap]
rs1991436	0.87[CHD][hapmap];0.91[GIH][hapmap]
rs4388997	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4764967	0.97[ASN][1000 genomes]
rs6539082	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6539083	0.97[ASN][1000 genomes]
rs6539084	0.97[ASN][1000 genomes]
rs703602	0.91[GIH][hapmap]
rs703603	0.84[CHD][hapmap];0.91[GIH][hapmap]
rs7295399	0.81[ASN][1000 genomes]
rs7303682	0.82[CHB][hapmap];0.90[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap]
rs7307320	0.82[CHB][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap]
rs7311417	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7955950	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7958280	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1346412	STAB2	cis	Thyroid	GTEx

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103961000-103968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103965400-103968000	Weak transcription	Fetal Muscle Leg	muscle
3	chr12:103965400-103968800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:103965400-103968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:103965400-103969000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:103965400-103969000	Weak transcription	Brain Anterior Caudate	brain
7	chr12:103965400-103969200	Weak transcription	Gastric	stomach
8	chr12:103965400-103969400	Weak transcription	Left Ventricle	heart
9	chr12:103965400-103969400	Weak transcription	Right Ventricle	heart
10	chr12:103965600-103969000	Weak transcription	Brain Substantia Nigra	brain
11	chr12:103965600-103969000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr12:103965600-103969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr12:103965600-103969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr12:103965600-103969200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr12:103965600-103969200	Weak transcription	Fetal Brain Female	brain
16	chr12:103965600-103969200	Weak transcription	Pancreas	Pancrea
17	chr12:103965600-103969200	Weak transcription	HMEC	breast
18	chr12:103965600-103969400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr12:103965800-103969000	Weak transcription	Brain Germinal Matrix	brain
20	chr12:103965800-103969000	Weak transcription	Fetal Intestine Large	intestine
21	chr12:103965800-103969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:103966000-103968400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr12:103966000-103968600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr12:103966000-103968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:103966000-103968600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr12:103966000-103968800	Weak transcription	Brain Hippocampus Middle	brain
27	chr12:103966000-103969000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:103966000-103969200	Weak transcription	HSMM	muscle
29	chr12:103966000-103969200	Weak transcription	NHEK	skin
30	chr12:103966400-103969000	Weak transcription	Fetal Heart	heart
31	chr12:103966800-103969400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr12:103967200-103968400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr12:103967200-103969200	Weak transcription	HSMMtube	muscle

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