Variant report

Variant	rs10745974
Chromosome Location	chr12:103969162-103969163
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:103967859..103969878-chr12:103972890..103976070,3	K562	blood:
2	chr12:103968812..103969756-chr12:104025690..104026992,7	K562	blood:
3	chr12:103276671..103277625-chr12:103968865..103969543,2	MCF-7	breast:
4	chr12:103968788..103969666-chr12:104278125..104278702,2	MCF-7	breast:
5	chr12:103964010..103966292-chr12:103967162..103970095,2	MCF-7	breast:
6	chr12:103968730..103969710-chr12:104025919..104027004,17	MCF-7	breast:
7	chr12:103968837..103969670-chr12:104026108..104026999,6	MCF-7	breast:
8	chr12:103954527..103956110-chr12:103966376..103969206,2	MCF-7	breast:

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10745971	0.93[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10745972	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10745973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778263	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10778264	0.97[ASN][1000 genomes]
rs10861040	0.82[EUR][1000 genomes]
rs10861041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12832814	0.97[ASN][1000 genomes]
rs1346411	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1346412	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1593810	0.97[ASN][1000 genomes]
rs1593811	0.98[ASN][1000 genomes]
rs1593812	0.98[ASN][1000 genomes]
rs1593813	0.98[ASN][1000 genomes]
rs17034119	0.98[ASN][1000 genomes]
rs4131522	0.91[ASN][1000 genomes]
rs4237987	0.97[ASN][1000 genomes]
rs4388997	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4764966	0.92[ASN][1000 genomes]
rs6539082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67057049	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7311417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7955950	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7979954	0.91[ASN][1000 genomes]

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103965400-103969200	Weak transcription	Gastric	stomach
2	chr12:103965400-103969400	Weak transcription	Left Ventricle	heart
3	chr12:103965400-103969400	Weak transcription	Right Ventricle	heart
4	chr12:103965600-103969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:103965600-103969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:103965600-103969200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:103965600-103969200	Weak transcription	Fetal Brain Female	brain
8	chr12:103965600-103969200	Weak transcription	Pancreas	Pancrea
9	chr12:103965600-103969200	Weak transcription	HMEC	breast
10	chr12:103965600-103969400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:103965800-103969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:103966000-103969200	Weak transcription	HSMM	muscle
13	chr12:103966000-103969200	Weak transcription	NHEK	skin
14	chr12:103966800-103969400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:103967200-103969200	Weak transcription	HSMMtube	muscle
16	chr12:103968000-103969200	Enhancers	Fetal Muscle Leg	muscle
17	chr12:103968400-103969200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr12:103968400-103969200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr12:103968600-103969200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr12:103968600-103969200	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr12:103968600-103969200	Enhancers	A549	lung
22	chr12:103968600-103969600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr12:103968600-103969800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr12:103968800-103969200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr12:103968800-103969200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr12:103968800-103969200	Enhancers	Liver	Liver
27	chr12:103968800-103969400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr12:103968800-103969600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
29	chr12:103968800-103969600	Enhancers	Spleen	Spleen
30	chr12:103968800-103969800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr12:103969000-103969200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr12:103969000-103969200	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr12:103969000-103969200	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
34	chr12:103969000-103969200	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr12:103969000-103969200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr12:103969000-103969200	Enhancers	Adipose Nuclei	Adipose
37	chr12:103969000-103969200	Enhancers	Brain Anterior Caudate	brain
38	chr12:103969000-103969200	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr12:103969000-103969200	Enhancers	Brain Germinal Matrix	brain
40	chr12:103969000-103969200	Enhancers	Duodenum Mucosa	Duodenum
41	chr12:103969000-103969200	Flanking Active TSS	Fetal Heart	heart
42	chr12:103969000-103969200	Enhancers	Fetal Intestine Large	intestine
43	chr12:103969000-103969200	Enhancers	Rectal Smooth Muscle	rectum
44	chr12:103969000-103969200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
45	chr12:103969000-103969400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
46	chr12:103969000-103969400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
47	chr12:103969000-103969400	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr12:103969000-103969400	Enhancers	Stomach Mucosa	stomach
49	chr12:103969000-103969600	Enhancers	H9 Cell Line	embryonic stem cell
50	chr12:103969000-103969600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--

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