Variant report

Variant	rs4388997
Chromosome Location	chr12:103955407-103955408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103955208..103957322-chr12:103959412..103961753,2	MCF-7	breast:
2	chr12:103954527..103956110-chr12:103966376..103969206,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10745971	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10745972	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10745973	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10745974	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10778263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10778264	0.93[ASN][1000 genomes]
rs10861040	0.80[EUR][1000 genomes]
rs10861041	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12832814	0.91[ASN][1000 genomes]
rs1346411	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1346412	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1593810	0.91[ASN][1000 genomes]
rs1593811	0.92[ASN][1000 genomes]
rs1593812	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1593813	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17034119	0.92[ASN][1000 genomes]
rs17034127	0.90[JPT][hapmap]
rs4131522	0.95[ASN][1000 genomes]
rs4237987	0.93[ASN][1000 genomes]
rs4764966	0.96[ASN][1000 genomes]
rs6539082	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67057049	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7311417	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7955950	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7979954	0.95[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103950200-103955600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:103951200-103956600	Enhancers	Placenta	Placenta
3	chr12:103952400-103956000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:103952800-103956800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:103952800-103958200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:103953200-103956400	Enhancers	HMEC	breast
7	chr12:103953400-103955600	Enhancers	NHDF-Ad	bronchial
8	chr12:103953800-103956800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr12:103954000-103955800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr12:103954000-103956000	Flanking Active TSS	A549	lung
11	chr12:103955000-103955600	Enhancers	HSMM	muscle
12	chr12:103955200-103956000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr12:103955200-103956600	Enhancers	NHEK	skin
14	chr12:103955400-103956800	Weak transcription	HSMMtube	muscle

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