Variant report

Variant	rs10745972
Chromosome Location	chr12:103964986-103964987
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103964010..103966292-chr12:103967162..103970095,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10454506	0.92[ASN][1000 genomes]
rs10745971	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10745973	0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10745974	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10778263	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10861040	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10861041	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1346411	0.91[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1346412	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1582880	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs4388997	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4764967	0.93[ASN][1000 genomes]
rs6539082	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6539083	0.93[ASN][1000 genomes]
rs6539084	0.93[ASN][1000 genomes]
rs7303682	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7307320	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs7311417	0.94[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7955950	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7958280	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10745972	STAB2	cis	Thyroid	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103961000-103968800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:103964600-103965000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr12:103964600-103966000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr12:103964800-103965000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:103964800-103965000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr12:103964800-103965000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr12:103964800-103965000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr12:103964800-103965000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr12:103964800-103965000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
10	chr12:103964800-103965000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr12:103964800-103965000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:103964800-103965000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:103964800-103965000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr12:103964800-103965000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:103964800-103965000	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr12:103964800-103965000	Enhancers	Brain Germinal Matrix	brain
17	chr12:103964800-103965000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
18	chr12:103964800-103965000	Enhancers	Fetal Intestine Large	intestine
19	chr12:103964800-103965000	Enhancers	Fetal Intestine Small	intestine
20	chr12:103964800-103965000	Enhancers	HSMM	muscle
21	chr12:103964800-103965000	Enhancers	NHEK	skin
22	chr12:103964800-103965200	Flanking Active TSS	HSMMtube	muscle
23	chr12:103964800-103965400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr12:103964800-103965400	Active TSS	Brain Anterior Caudate	brain
25	chr12:103964800-103965600	Active TSS	Brain Substantia Nigra	brain

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