Variant report

Variant	rs10861041
Chromosome Location	chr12:103969381-103969382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:103967859..103969878-chr12:103972890..103976070,3	K562	blood:
2	chr12:103968812..103969756-chr12:104025690..104026992,7	K562	blood:
3	chr12:103276671..103277625-chr12:103968865..103969543,2	MCF-7	breast:
4	chr12:103968788..103969666-chr12:104278125..104278702,2	MCF-7	breast:
5	chr12:103964010..103966292-chr12:103967162..103970095,2	MCF-7	breast:
6	chr12:103968730..103969710-chr12:104025919..104027004,17	MCF-7	breast:
7	chr12:103968837..103969670-chr12:104026108..104026999,6	MCF-7	breast:
8	chr12:103969311..103971113-chr12:103972215..103974631,2	MCF-7	breast:

No data

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10745971	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10745972	0.91[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10745973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10745974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10778263	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10778264	0.97[ASN][1000 genomes]
rs10861040	0.81[EUR][1000 genomes]
rs12832814	0.97[ASN][1000 genomes]
rs1346411	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1346412	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1593810	0.97[ASN][1000 genomes]
rs1593811	0.98[ASN][1000 genomes]
rs1593812	0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1593813	0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17034119	0.98[ASN][1000 genomes]
rs17034127	0.89[JPT][hapmap]
rs4131522	0.91[ASN][1000 genomes]
rs4237987	0.97[ASN][1000 genomes]
rs4388997	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4764966	0.92[ASN][1000 genomes]
rs6539082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67057049	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7311417	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7955950	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7979954	0.91[ASN][1000 genomes]

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103965400-103969400	Weak transcription	Left Ventricle	heart
2	chr12:103965400-103969400	Weak transcription	Right Ventricle	heart
3	chr12:103965600-103969400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:103966800-103969400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr12:103968600-103969600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:103968600-103969800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:103968800-103969400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:103968800-103969600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr12:103968800-103969600	Enhancers	Spleen	Spleen
10	chr12:103968800-103969800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr12:103969000-103969400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
12	chr12:103969000-103969400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
13	chr12:103969000-103969400	Active TSS	Brain Inferior Temporal Lobe	brain
14	chr12:103969000-103969400	Enhancers	Stomach Mucosa	stomach
15	chr12:103969000-103969600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr12:103969000-103969600	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
17	chr12:103969000-103969600	Active TSS	Brain Hippocampus Middle	brain
18	chr12:103969000-103969600	Enhancers	Brain Substantia Nigra	brain
19	chr12:103969000-103969600	Active TSS	Stomach Smooth Muscle	stomach
20	chr12:103969000-103969800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr12:103969000-103969800	Active TSS	Colon Smooth Muscle	Colon
22	chr12:103969000-103969800	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr12:103969200-103969400	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr12:103969200-103969400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:103969200-103969400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr12:103969200-103969400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr12:103969200-103969400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr12:103969200-103969400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr12:103969200-103969400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:103969200-103969400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:103969200-103969400	Active TSS	Brain Cingulate Gyrus	brain
32	chr12:103969200-103969400	Active TSS	Colonic Mucosa	Colon
33	chr12:103969200-103969400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
34	chr12:103969200-103969400	Bivalent/Poised TSS	Fetal Stomach	stomach
35	chr12:103969200-103969400	Active TSS	Pancreas	Pancrea
36	chr12:103969200-103969400	Active TSS	Rectal Mucosa Donor 31	rectum
37	chr12:103969200-103969400	Active TSS	Skeletal Muscle Female	skeletal muscle
38	chr12:103969200-103969400	Active TSS	HepG2	liver
39	chr12:103969200-103969400	Active TSS	NHEK	skin
40	chr12:103969200-103969400	Active TSS	Osteobl	bone
41	chr12:103969200-103969600	Active TSS	ES-I3 Cell Line	embryonic stem cell
42	chr12:103969200-103969600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
43	chr12:103969200-103969600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr12:103969200-103969600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr12:103969200-103969600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr12:103969200-103969600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
47	chr12:103969200-103969600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr12:103969200-103969600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr12:103969200-103969600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr12:103969200-103969600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood

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