Variant report

Variant	rs17034127
Chromosome Location	chr12:103977537-103977538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr12:103976639-103977574	GM12878	blood:	n/a	chr12:103977019-103977033 chr12:103977016-103977036 chr12:103977021-103977036 chr12:103977018-103977034

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103972674..103974362-chr12:103976968..103979851,2	K562	blood:

Variant related genes	Relation type
STAB2	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10861044	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs10861045	0.88[ASN][1000 genomes]
rs10861046	0.88[ASN][1000 genomes]
rs10861047	0.88[ASN][1000 genomes]
rs10861048	0.87[ASN][1000 genomes]
rs10861049	0.85[ASN][1000 genomes]
rs10861050	0.82[CHB][hapmap]
rs10861051	0.87[ASN][1000 genomes]
rs11111672	0.87[ASN][1000 genomes]
rs11111673	0.87[ASN][1000 genomes]
rs11111674	0.87[ASN][1000 genomes]
rs12303334	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12367313	0.87[ASN][1000 genomes]
rs12832814	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1305368	0.86[ASN][1000 genomes]
rs1593806	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs1593810	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1593811	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1593812	0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1593813	0.89[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1610171	0.88[ASN][1000 genomes]
rs1610202	0.82[CHB][hapmap];0.83[ASN][1000 genomes]
rs17034119	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17034172	0.82[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17034187	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17034225	0.90[CHB][hapmap]
rs2086244	0.87[ASN][1000 genomes]
rs2086245	0.87[ASN][1000 genomes]
rs2086246	0.87[ASN][1000 genomes]
rs2100980	0.87[ASN][1000 genomes]
rs2100981	0.87[ASN][1000 genomes]
rs35929067	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4015364	0.87[ASN][1000 genomes]
rs4237987	0.82[AMR][1000 genomes]
rs56402195	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56916543	0.87[ASN][1000 genomes]
rs6539085	0.85[ASN][1000 genomes]
rs6539091	0.82[CHB][hapmap]
rs7134377	0.88[ASN][1000 genomes]
rs7953892	0.82[CHB][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7958925	0.83[ASN][1000 genomes]
rs7966214	0.87[ASN][1000 genomes]
rs7969320	0.87[ASN][1000 genomes]
rs7979192	0.87[ASN][1000 genomes]
rs7979345	0.87[ASN][1000 genomes]
rs7979507	0.87[ASN][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links