Variant report

Variant	rs17034172
Chromosome Location	chr12:103983487-103983488
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr12:103983278-103983755	GM12878	blood:	n/a	n/a
2	RUNX3	chr12:103983286-103983745	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000212594	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10861044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10861045	0.96[ASN][1000 genomes]
rs10861046	0.96[ASN][1000 genomes]
rs10861047	0.96[ASN][1000 genomes]
rs10861048	0.95[ASN][1000 genomes]
rs10861049	0.93[ASN][1000 genomes]
rs10861050	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10861051	0.95[ASN][1000 genomes]
rs11111672	0.95[ASN][1000 genomes]
rs11111673	0.95[ASN][1000 genomes]
rs11111674	0.95[ASN][1000 genomes]
rs12303334	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12367313	0.95[ASN][1000 genomes]
rs12832814	1.00[EUR][1000 genomes]
rs1305368	0.94[ASN][1000 genomes]
rs1593806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1593810	1.00[EUR][1000 genomes]
rs1593811	1.00[EUR][1000 genomes]
rs1593812	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1593813	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1610171	0.96[ASN][1000 genomes]
rs1610202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17034119	1.00[EUR][1000 genomes]
rs17034127	0.82[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17034187	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17034225	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2086244	0.95[ASN][1000 genomes]
rs2086245	0.95[ASN][1000 genomes]
rs2086246	0.95[ASN][1000 genomes]
rs2100980	0.95[ASN][1000 genomes]
rs2100981	0.95[ASN][1000 genomes]
rs35929067	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4015364	0.95[ASN][1000 genomes]
rs56402195	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56916543	0.95[ASN][1000 genomes]
rs6539085	0.93[ASN][1000 genomes]
rs6539091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7134377	0.96[ASN][1000 genomes]
rs7953892	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7958925	0.92[ASN][1000 genomes]
rs7966214	0.95[ASN][1000 genomes]
rs7969320	0.95[ASN][1000 genomes]
rs7979192	0.95[ASN][1000 genomes]
rs7979345	0.95[ASN][1000 genomes]
rs7979507	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3391153	chr12:103983229-103989747	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103983000-103984200	Enhancers	GM12878-XiMat	blood
2	chr12:103983400-103984000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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