Variant report
| Variant | rs56402195 |
|---|---|
| Chromosome Location | chr12:103993975-103993976 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:103989071..103991927-chr12:103992447..103994497,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:45)
| rs_ID | r2[population] |
|---|---|
| rs10861044 | 1.00[ASN][1000 genomes] |
| rs10861045 | 1.00[ASN][1000 genomes] |
| rs10861046 | 1.00[ASN][1000 genomes] |
| rs10861047 | 1.00[ASN][1000 genomes] |
| rs10861048 | 0.99[ASN][1000 genomes] |
| rs10861049 | 0.97[ASN][1000 genomes] |
| rs10861050 | 0.81[ASN][1000 genomes] |
| rs10861051 | 0.99[ASN][1000 genomes] |
| rs11111672 | 0.99[ASN][1000 genomes] |
| rs11111673 | 0.99[ASN][1000 genomes] |
| rs11111674 | 0.99[ASN][1000 genomes] |
| rs12367313 | 0.99[ASN][1000 genomes] |
| rs12832814 | 1.00[EUR][1000 genomes] |
| rs1305368 | 0.98[ASN][1000 genomes] |
| rs1593806 | 1.00[ASN][1000 genomes] |
| rs1593810 | 1.00[EUR][1000 genomes] |
| rs1593811 | 1.00[EUR][1000 genomes] |
| rs1593812 | 1.00[EUR][1000 genomes] |
| rs1593813 | 1.00[EUR][1000 genomes] |
| rs1610171 | 1.00[ASN][1000 genomes] |
| rs1610202 | 0.96[ASN][1000 genomes] |
| rs17034119 | 1.00[EUR][1000 genomes] |
| rs17034127 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17034172 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17034187 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2086244 | 0.99[ASN][1000 genomes] |
| rs2086245 | 0.99[ASN][1000 genomes] |
| rs2086246 | 0.99[ASN][1000 genomes] |
| rs2100980 | 0.99[ASN][1000 genomes] |
| rs2100981 | 0.99[ASN][1000 genomes] |
| rs35929067 | 0.99[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4015364 | 0.99[ASN][1000 genomes] |
| rs56916543 | 0.99[ASN][1000 genomes] |
| rs58261212 | 0.81[ASN][1000 genomes] |
| rs6539085 | 0.97[ASN][1000 genomes] |
| rs7134377 | 1.00[ASN][1000 genomes] |
| rs7953892 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7958707 | 0.81[ASN][1000 genomes] |
| rs7958798 | 0.81[ASN][1000 genomes] |
| rs7958925 | 0.96[ASN][1000 genomes] |
| rs7966214 | 0.99[ASN][1000 genomes] |
| rs7969320 | 0.99[ASN][1000 genomes] |
| rs7979192 | 0.99[ASN][1000 genomes] |
| rs7979345 | 0.99[ASN][1000 genomes] |
| rs7979507 | 0.99[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:103988400-104000400 | Weak transcription | Spleen | Spleen |
| 2 | chr12:103993400-103994600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 3 | chr12:103993600-103994200 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
