Variant report

Variant	rs35929067
Chromosome Location	chr12:103979628-103979629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr12:103979379-103979668	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:103979608..103980912-chr12:104026115..104027121,4	MCF-7	breast:
2	chr12:103978811..103980494-chr12:103984824..103986787,2	K562	blood:
3	chr12:103972674..103974362-chr12:103976968..103979851,2	K562	blood:
4	chr12:103979507..103980822-chr12:104025776..104026985,11	MCF-7	breast:

Variant related genes	Relation type
STAB2	TF binding region
ENSG00000212594	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10778264	0.82[AMR][1000 genomes]
rs10861044	0.88[ASN][1000 genomes]
rs10861045	0.88[ASN][1000 genomes]
rs10861046	0.88[ASN][1000 genomes]
rs10861047	0.88[ASN][1000 genomes]
rs10861048	0.87[ASN][1000 genomes]
rs10861049	0.85[ASN][1000 genomes]
rs10861051	0.87[ASN][1000 genomes]
rs11111672	0.87[ASN][1000 genomes]
rs11111673	0.87[ASN][1000 genomes]
rs11111674	0.87[ASN][1000 genomes]
rs12367313	0.87[ASN][1000 genomes]
rs12832814	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1305368	0.86[ASN][1000 genomes]
rs1593806	0.88[ASN][1000 genomes]
rs1593810	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1593811	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1593812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1593813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1610171	0.88[ASN][1000 genomes]
rs1610202	0.83[ASN][1000 genomes]
rs17034119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17034127	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17034172	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17034187	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2086244	0.87[ASN][1000 genomes]
rs2086245	0.87[ASN][1000 genomes]
rs2086246	0.87[ASN][1000 genomes]
rs2100980	0.87[ASN][1000 genomes]
rs2100981	0.87[ASN][1000 genomes]
rs4015364	0.87[ASN][1000 genomes]
rs4764966	0.81[AMR][1000 genomes]
rs56402195	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56916543	0.87[ASN][1000 genomes]
rs6539085	0.85[ASN][1000 genomes]
rs7134377	0.88[ASN][1000 genomes]
rs7953892	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7958925	0.83[ASN][1000 genomes]
rs7966214	0.87[ASN][1000 genomes]
rs7969320	0.87[ASN][1000 genomes]
rs7979192	0.87[ASN][1000 genomes]
rs7979345	0.87[ASN][1000 genomes]
rs7979507	0.87[ASN][1000 genomes]
rs7979954	0.82[AMR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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