Variant report

Variant	rs73036872
Chromosome Location	chr6:166987645-166987646
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166982541..166984779-chr6:166986370..166988271,2	K562	blood:
2	chr6:166987161..166988700-chr6:166996130..166998368,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs3799616	0.87[AMR][1000 genomes]
rs3823204	0.94[AMR][1000 genomes]
rs73036826	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886941	chr6:166907173-166996991	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv5592	chr6:166958317-167002951	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1029530	chr6:166977678-167016052	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166974000-166989600	Weak transcription	Primary T cells from cord blood	blood
2	chr6:166974400-166992400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:166976400-166988600	Weak transcription	Ovary	ovary
4	chr6:166979400-166996600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:166979400-166997600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:166981200-166992200	Weak transcription	HSMMtube	muscle
7	chr6:166981800-167002400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:166986000-166987800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:166986000-166987800	Enhancers	Lung	lung
10	chr6:166986000-166988800	Enhancers	Right Ventricle	heart
11	chr6:166986000-166996400	Weak transcription	Fetal Kidney	kidney
12	chr6:166986200-166987800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:166986200-167002200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:166986400-166988800	Weak transcription	HSMM	muscle
15	chr6:166986400-166989200	Enhancers	Adipose Nuclei	Adipose
16	chr6:166986400-166989400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr6:166986400-166991600	Weak transcription	Fetal Brain Male	brain
18	chr6:166986600-166988600	Weak transcription	HUVEC	blood vessel
19	chr6:166986600-166988600	Weak transcription	NHDF-Ad	bronchial
20	chr6:166986600-166988800	Weak transcription	Esophagus	oesophagus
21	chr6:166986600-166989000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:166986600-166994800	Weak transcription	Pancreas	Pancrea
23	chr6:166986600-167001400	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:166986800-166988000	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:166986800-166988400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:166986800-166989600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:166986800-166990000	Weak transcription	Fetal Stomach	stomach
28	chr6:166986800-166991800	Weak transcription	Fetal Brain Female	brain
29	chr6:166986800-166994800	Weak transcription	Gastric	stomach
30	chr6:166986800-166997800	Weak transcription	Brain Substantia Nigra	brain
31	chr6:166986800-167003000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:166987000-166989600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:166987000-166993600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:166987000-166994800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:166987000-166995400	Weak transcription	Spleen	Spleen
36	chr6:166987000-166996600	Weak transcription	Osteobl	bone
37	chr6:166987000-166997200	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:166987000-167002000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:166987200-166987800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:166987200-166988800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:166987200-166991600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:166987200-166992400	Weak transcription	Left Ventricle	heart
43	chr6:166987200-166992600	Weak transcription	Fetal Heart	heart
44	chr6:166987200-166995000	Weak transcription	Brain Angular Gyrus	brain
45	chr6:166987200-166997600	Weak transcription	NHLF	lung
46	chr6:166987200-166998400	Weak transcription	NH-A	brain
47	chr6:166987200-167001800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr6:166987400-166990000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:166987400-166990000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:166987600-166989800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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