Variant report

Variant	rs73037036
Chromosome Location	chr19:38161070-38161071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11083427	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11083428	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11083430	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11665759	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11666662	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11666738	1.00[EUR][1000 genomes]
rs12151280	0.92[EUR][1000 genomes]
rs12162238	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12459013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12462505	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1478462	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17305326	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2045911	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2126976	0.83[ASN][1000 genomes]
rs2290999	1.00[EUR][1000 genomes]
rs35205379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3848624	0.81[ASN][1000 genomes]
rs59426132	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60731897	0.81[ASN][1000 genomes]
rs7248397	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73031309	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031321	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73031322	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73031326	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73033117	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73033129	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73033139	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73033145	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73035158	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73035164	0.98[EUR][1000 genomes]
rs73039018	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38152000-38169000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr19:38156600-38165200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr19:38156600-38165200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:38159000-38161400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
5	chr19:38159000-38161800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr19:38159000-38162600	ZNF genes & repeats	Liver	Liver
7	chr19:38159200-38161200	ZNF genes & repeats	Colon Smooth Muscle	Colon
8	chr19:38159200-38161200	ZNF genes & repeats	Fetal Lung	lung
9	chr19:38159200-38161400	ZNF genes & repeats	Brain Anterior Caudate	brain
10	chr19:38159200-38165200	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:38159400-38161200	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
12	chr19:38159400-38161200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:38159400-38161800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
14	chr19:38160000-38161200	ZNF genes & repeats	Dnd41	blood
15	chr19:38161000-38164400	Weak transcription	Ovary	ovary

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