Variant report

Variant	rs73039018
Chromosome Location	chr19:38217894-38217895
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1056405	0.81[AFR][1000 genomes]
rs11083427	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11083428	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11083430	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11083434	0.85[AFR][1000 genomes]
rs11665869	0.87[AFR][1000 genomes]
rs11666021	0.81[AFR][1000 genomes]
rs11666662	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11666738	0.87[EUR][1000 genomes]
rs11672440	0.88[AFR][1000 genomes]
rs12162238	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12459013	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12460735	0.81[AFR][1000 genomes]
rs12462505	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1478462	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17305326	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2045911	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2290999	0.87[EUR][1000 genomes]
rs241952	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs241954	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs241955	0.87[ASN][1000 genomes]
rs35205379	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3848624	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4088299	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4356596	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4510143	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59426132	0.87[EUR][1000 genomes]
rs60731897	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7248397	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73025630	0.87[AFR][1000 genomes]
rs73027418	0.84[AFR][1000 genomes]
rs73031326	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73033117	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73033129	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73033139	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73033145	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73035158	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73035164	0.86[EUR][1000 genomes]
rs73037036	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73041004	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs73041022	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73041034	0.85[AFR][1000 genomes]
rs73041045	0.81[AFR][1000 genomes]
rs73041047	0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv579468	chr19:37977609-38293487	ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv949296	chr19:38034722-38763140	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv833820	chr19:38190721-38414049	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:38210800-38229400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr19:38211000-38219000	Weak transcription	Ovary	ovary
3	chr19:38211000-38222000	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr19:38211000-38224600	Weak transcription	Fetal Stomach	stomach
5	chr19:38211000-38225200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr19:38211000-38225200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr19:38211000-38226400	Weak transcription	Psoas Muscle	Psoas
8	chr19:38211000-38227600	Weak transcription	Brain Hippocampus Middle	brain
9	chr19:38211000-38228400	Weak transcription	Fetal Muscle Leg	muscle
10	chr19:38211000-38228600	Weak transcription	Brain Substantia Nigra	brain
11	chr19:38211000-38229200	Weak transcription	Fetal Kidney	kidney
12	chr19:38211000-38229200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr19:38211000-38229200	Weak transcription	Left Ventricle	heart
14	chr19:38211000-38229400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr19:38211000-38229400	Weak transcription	Brain Germinal Matrix	brain
16	chr19:38211000-38229400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr19:38211000-38230200	Weak transcription	Hela-S3	cervix
18	chr19:38211200-38225600	Weak transcription	Stomach Smooth Muscle	stomach
19	chr19:38211200-38229200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr19:38211200-38229200	Weak transcription	Fetal Brain Female	brain
21	chr19:38211200-38229200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr19:38215600-38219600	ZNF genes & repeats	Liver	Liver

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