Variant report

Variant	rs73037260
Chromosome Location	chr19:39994077-39994078
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:39925085..39928337-chr19:39992062..39995488,6	K562	blood:
2	chr19:39992886..39995682-chr19:39996281..39999154,5	K562	blood:
3	chr19:39988896..39990502-chr19:39993866..39995891,2	MCF-7	breast:
4	chr19:39993528..39996626-chr19:40010694..40012599,3	K562	blood:
5	chr19:39897297..39899579-chr19:39992727..39996062,3	K562	blood:
6	chr19:39993663..39995682-chr19:39996281..39998082,2	K562	blood:
7	chr19:39969549..39972807-chr19:39992061..39995133,4	K562	blood:

Variant related genes	Relation type
ENSG00000105197	Chromatin interaction
ENSG00000196235	Chromatin interaction
ENSG00000090932	Chromatin interaction
ENSG00000105193	Chromatin interaction
ENSG00000128016	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11540910	1.00[AMR][1000 genomes]
rs56928606	1.00[AMR][1000 genomes]
rs61216770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911689	chr19:39903088-40021759	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv911690	chr19:39903088-40046863	Weak transcription Bivalent Enhancer Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv523856	chr19:39913558-39997472	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv911691	chr19:39979966-40029386	Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv911692	chr19:39979966-40046863	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1060251	chr19:39982988-40099773	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
7	nsv911693	chr19:39986241-40033574	Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39989400-39997600	Weak transcription	Right Atrium	heart
2	chr19:39990200-39997600	Weak transcription	Gastric	stomach
3	chr19:39991400-39996400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:39993200-39994200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr19:39993200-39994200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr19:39993200-39994200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr19:39993200-39994200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
8	chr19:39993200-39994200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:39993200-39994200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr19:39993200-39994200	Bivalent Enhancer	Placenta	Placenta
11	chr19:39993200-39994200	Bivalent Enhancer	Fetal Stomach	stomach
12	chr19:39993200-39994400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
13	chr19:39993400-39994200	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
14	chr19:39993600-39994200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr19:39993600-39994200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr19:39993600-39994200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr19:39993600-39994200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
18	chr19:39993600-39994200	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr19:39993600-39995000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr19:39993800-39994200	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr19:39993800-39994200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:39993800-39994200	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr19:39993800-39994200	Bivalent Enhancer	Fetal Thymus	thymus
24	chr19:39993800-39994200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
25	chr19:39994000-39994200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
26	chr19:39994000-39994200	Bivalent Enhancer	A549	lung
27	chr19:39994000-39994200	Enhancers	Hela-S3	cervix
28	chr19:39994000-39994200	Enhancers	K562	blood
29	chr19:39994000-39994400	Weak transcription	Fetal Brain Female	brain
30	chr19:39994000-39996400	Strong transcription	Brain Germinal Matrix	brain
31	chr19:39994000-39997200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr19:39994000-39997400	Weak transcription	Fetal Brain Male	brain
33	chr19:39994000-39997600	Weak transcription	Pancreas	Pancrea

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