Variant report

Variant	rs73038661
Chromosome Location	chr12:1460581-1460582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 125 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs12099521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35478691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6489279	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6489281	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7297773	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7301327	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73026411	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73026412	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026429	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026434	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026443	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026445	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026449	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73026459	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73029190	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73029193	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73029201	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031206	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031213	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031220	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031222	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031224	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031227	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031291	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031293	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031296	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031299	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73031301	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032705	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032711	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032714	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032715	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032719	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032722	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032723	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032724	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032728	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032731	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032733	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032734	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032737	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032739	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032744	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73032745	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034905	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034913	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034918	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034919	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034925	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034926	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034928	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034930	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034931	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034933	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034934	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034936	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034938	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034939	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034944	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034947	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034948	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034949	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034952	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034954	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73034957	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036621	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036623	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036624	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036626	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036627	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036630	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036637	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036639	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036644	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036647	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036648	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036649	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036651	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036653	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73036655	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73038636	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038670	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038672	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038675	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038689	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73038691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040853	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73040857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7304894	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305340	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7305680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966310	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7976985	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7977090	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7978960	0.81[AFR][1000 genomes]
rs9739515	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898576	chr12:813411-1553450	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948760	chr12:863833-1542875	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045278	chr12:920251-1697030	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv898579	chr12:1013176-1510505	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv898580	chr12:1024688-1569097	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	esv2762958	chr12:1049279-1554962	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1052559	chr12:1077964-1588543	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
9	nsv898581	chr12:1084783-1527359	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv1046134	chr12:1153489-1675223	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
11	nsv541344	chr12:1153489-1675223	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
12	nsv1042863	chr12:1163817-1902302	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv541345	chr12:1163817-1902302	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv1039826	chr12:1259831-1483326	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv930996	chr12:1270113-1473328	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1050361	chr12:1274052-1541558	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv556944	chr12:1308553-1569097	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
18	nsv898583	chr12:1314430-1507616	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv470257	chr12:1314430-1514021	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv1054178	chr12:1372157-1682699	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
21	nsv541347	chr12:1372157-1682699	Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
22	nsv1035935	chr12:1400974-1608625	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
23	nsv1039946	chr12:1429190-1548852	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv1044918	chr12:1432740-1584649	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
25	nsv541348	chr12:1432740-1584649	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
26	nsv556949	chr12:1437726-1514021	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv1046515	chr12:1440896-1588543	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1428200-1500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:1434600-1473000	Weak transcription	Primary B cells from cord blood	blood
3	chr12:1434600-1476600	Weak transcription	Brain Anterior Caudate	brain
4	chr12:1439000-1497800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:1441000-1480200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr12:1442600-1480800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr12:1444200-1481000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr12:1449800-1464600	Weak transcription	Right Ventricle	heart
9	chr12:1449800-1484400	Weak transcription	Esophagus	oesophagus
10	chr12:1450000-1480400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr12:1450000-1484200	Weak transcription	Aorta	Aorta
12	chr12:1450000-1500000	Weak transcription	Spleen	Spleen
13	chr12:1453600-1464200	Weak transcription	Adipose Nuclei	Adipose
14	chr12:1454000-1461000	Weak transcription	Fetal Lung	lung
15	chr12:1455400-1481200	Weak transcription	Brain Angular Gyrus	brain
16	chr12:1456000-1466400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:1456800-1460800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr12:1457200-1461400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:1457600-1489000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr12:1457800-1461600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr12:1458000-1461400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:1458400-1460600	Enhancers	Osteobl	bone
23	chr12:1458400-1473000	Weak transcription	Primary T cells from cord blood	blood
24	chr12:1458600-1460800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr12:1458600-1465800	Weak transcription	HUVEC	blood vessel
26	chr12:1458800-1460600	Enhancers	NHEK	skin
27	chr12:1458800-1461600	Enhancers	NHDF-Ad	bronchial
28	chr12:1458800-1462000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:1459000-1461000	Enhancers	HMEC	breast
30	chr12:1459000-1461000	Enhancers	HSMMtube	muscle
31	chr12:1459000-1461400	Enhancers	NHLF	lung
32	chr12:1459800-1462800	Weak transcription	K562	blood
33	chr12:1459800-1464400	Weak transcription	Fetal Muscle Leg	muscle
34	chr12:1459800-1464600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr12:1459800-1469400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr12:1460000-1465800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr12:1460000-1466000	Weak transcription	Stomach Smooth Muscle	stomach
38	chr12:1460000-1466000	Weak transcription	HepG2	liver
39	chr12:1460200-1463200	Weak transcription	Left Ventricle	heart
40	chr12:1460200-1464200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr12:1460200-1464600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr12:1460200-1464800	Weak transcription	Colon Smooth Muscle	Colon
43	chr12:1460200-1465800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr12:1460200-1466200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr12:1460200-1472200	Weak transcription	Right Atrium	heart
46	chr12:1460200-1478600	Weak transcription	Psoas Muscle	Psoas
47	chr12:1460200-1485000	Weak transcription	Fetal Intestine Small	intestine
48	chr12:1460200-1485600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr12:1460200-1485600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr12:1460400-1460800	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links