Variant report

Variant	rs73039019
Chromosome Location	chr2:181903097-181903098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:181901341..181903920-chr2:181904658..181907340,2	K562	blood:
2	chr2:181890931..181892991-chr2:181900599..181903348,2	K562	blood:
3	chr2:181889030..181891669-chr2:181901618..181903708,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10497575	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16867379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867382	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2292856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2368188	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4572560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4667049	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57612208	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73025610	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73025614	1.00[EUR][1000 genomes]
rs73025615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73037059	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73037069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73037078	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73037079	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73037093	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73037095	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73037098	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73039024	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73039027	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73039030	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73039098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73039101	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73041008	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73041014	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73041021	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs873255	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs908735	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181895000-181904000	Weak transcription	Left Ventricle	heart
2	chr2:181900600-181903400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:181900600-181904400	Enhancers	NHLF	lung
4	chr2:181900800-181904200	Enhancers	Osteobl	bone
5	chr2:181901000-181903200	Enhancers	HMEC	breast
6	chr2:181901000-181903400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr2:181901000-181903600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:181901200-181903200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:181901200-181903400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:181901200-181903600	Enhancers	NHEK	skin
11	chr2:181901200-181903800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:181901200-181903800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:181901200-181904400	Enhancers	NHDF-Ad	bronchial
14	chr2:181901200-181912200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:181901400-181903800	Enhancers	NH-A	brain
16	chr2:181901400-181906400	Weak transcription	Psoas Muscle	Psoas
17	chr2:181901400-181910000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:181901600-181911200	Weak transcription	GM12878-XiMat	blood
19	chr2:181902000-181903200	Weak transcription	A549	lung
20	chr2:181902200-181926400	Weak transcription	HSMM	muscle
21	chr2:181902600-181909800	Weak transcription	Brain Germinal Matrix	brain
22	chr2:181902800-181903800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:181902800-181905600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:181902800-181934200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:181903000-181910200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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