Variant report

Variant	rs73040654
Chromosome Location	chr12:9022522-9022523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55798620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56028131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56034097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56273384	0.94[AMR][1000 genomes]
rs56290507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56311454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038782	0.94[AMR][1000 genomes]
rs73038791	0.94[AMR][1000 genomes]
rs73038794	0.94[AMR][1000 genomes]
rs73040625	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73047818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73047819	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73047825	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73047833	0.82[AMR][1000 genomes]
rs73047849	0.82[AMR][1000 genomes]
rs73047850	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049949	chr12:9008609-9049198	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:8987600-9040000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr12:8996000-9040000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:9007000-9029600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:9007200-9027600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:9011800-9029800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:9013600-9029400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr12:9013800-9033800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:9021600-9024000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:9022400-9030400	Weak transcription	Esophagus	oesophagus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links