Variant report

Variant	rs73040716
Chromosome Location	chr1:175198187-175198188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4651393	1.00[AMR][1000 genomes]
rs60781969	1.00[AMR][1000 genomes]
rs73034614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73034615	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175190800-175201200	Weak transcription	Psoas Muscle	Psoas
2	chr1:175191600-175199200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:175192600-175200200	Enhancers	Primary B cells from peripheral blood	blood
4	chr1:175193200-175200200	Enhancers	Primary B cells from cord blood	blood
5	chr1:175194800-175203600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:175195400-175199000	Weak transcription	GM12878-XiMat	blood
7	chr1:175196800-175203600	Weak transcription	Placenta	Placenta
8	chr1:175198000-175199600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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