Variant report

Variant	rs73034615
Chromosome Location	chr1:175169751-175169752
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175160945..175163569-chr1:175168587..175171847,3	K562	blood:

Variant related genes	Relation type
ENSG00000235750	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12066900	1.00[EUR][1000 genomes]
rs12074601	1.00[EUR][1000 genomes]
rs2157566	1.00[EUR][1000 genomes]
rs2861278	1.00[EUR][1000 genomes]
rs4650736	1.00[EUR][1000 genomes]
rs4650737	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4650738	1.00[EUR][1000 genomes]
rs4651393	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4651397	1.00[EUR][1000 genomes]
rs4651401	1.00[EUR][1000 genomes]
rs4651403	1.00[EUR][1000 genomes]
rs4651442	1.00[EUR][1000 genomes]
rs60264525	1.00[EUR][1000 genomes]
rs60781969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61553406	1.00[EUR][1000 genomes]
rs6685421	1.00[EUR][1000 genomes]
rs73032419	1.00[EUR][1000 genomes]
rs73032430	1.00[EUR][1000 genomes]
rs73032442	1.00[EUR][1000 genomes]
rs73032445	1.00[EUR][1000 genomes]
rs73034614	1.00[AMR][1000 genomes]
rs73036233	1.00[EUR][1000 genomes]
rs73036254	1.00[EUR][1000 genomes]
rs73038926	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73038929	1.00[EUR][1000 genomes]
rs73038933	1.00[EUR][1000 genomes]
rs73038939	1.00[EUR][1000 genomes]
rs73038947	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73040716	1.00[AMR][1000 genomes]
rs73046091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175162600-175178000	Weak transcription	Psoas Muscle	Psoas
2	chr1:175163000-175173800	Weak transcription	Colonic Mucosa	Colon
3	chr1:175163200-175169800	Weak transcription	Liver	Liver
4	chr1:175163200-175170200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr1:175163600-175173600	Weak transcription	Small Intestine	intestine
6	chr1:175166800-175170000	Weak transcription	Thymus	Thymus
7	chr1:175167200-175170200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr1:175167200-175170400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr1:175167200-175172600	Weak transcription	GM12878-XiMat	blood
10	chr1:175167200-175175600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr1:175167200-175175800	Weak transcription	Primary T cells from cord blood	blood
12	chr1:175167400-175170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr1:175167400-175170800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:175167800-175175600	Weak transcription	Hela-S3	cervix
15	chr1:175167800-175175800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr1:175168000-175171000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:175168000-175173000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:175168000-175173400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:175168000-175173400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:175168000-175173400	Weak transcription	NHEK	skin
21	chr1:175168200-175169800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:175168400-175173400	Weak transcription	HMEC	breast
23	chr1:175168800-175170000	Enhancers	Left Ventricle	heart
24	chr1:175168800-175170000	Enhancers	Lung	lung
25	chr1:175168800-175171000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr1:175168800-175171200	Enhancers	Fetal Lung	lung
27	chr1:175168800-175171400	Enhancers	Fetal Stomach	stomach
28	chr1:175168800-175171400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr1:175169000-175170200	Enhancers	Stomach Smooth Muscle	stomach
30	chr1:175169000-175170200	Enhancers	HUVEC	blood vessel
31	chr1:175169200-175169800	Enhancers	Adipose Nuclei	Adipose
32	chr1:175169200-175170400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:175169200-175170600	Enhancers	Aorta	Aorta
34	chr1:175169200-175170600	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr1:175169200-175170800	Enhancers	Ovary	ovary
36	chr1:175169200-175171000	Enhancers	Fetal Kidney	kidney
37	chr1:175169200-175171000	Enhancers	Right Atrium	heart
38	chr1:175169200-175171400	Enhancers	Fetal Muscle Leg	muscle
39	chr1:175169200-175171600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr1:175169200-175171600	Enhancers	Placenta	Placenta
41	chr1:175169400-175170000	Enhancers	Fetal Intestine Small	intestine
42	chr1:175169400-175170000	Enhancers	Right Ventricle	heart
43	chr1:175169400-175170000	Enhancers	Spleen	Spleen
44	chr1:175169400-175170200	Enhancers	Stomach Mucosa	stomach
45	chr1:175169400-175170600	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr1:175169400-175170800	Enhancers	Brain Hippocampus Middle	brain
47	chr1:175169400-175171000	Enhancers	Fetal Thymus	thymus
48	chr1:175169400-175171000	Enhancers	Rectal Smooth Muscle	rectum
49	chr1:175169400-175171200	Enhancers	Duodenum Mucosa	Duodenum
50	chr1:175169600-175170000	Weak transcription	Primary B cells from peripheral blood	blood

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