Variant report
| Variant | rs73046091 |
|---|---|
| Chromosome Location | chr1:175252640-175252641 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:175251047..175252912-chr1:175275313..175276939,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000260990 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs12066900 | 1.00[EUR][1000 genomes] |
| rs12074601 | 1.00[EUR][1000 genomes] |
| rs2157566 | 1.00[EUR][1000 genomes] |
| rs2861278 | 1.00[EUR][1000 genomes] |
| rs4650736 | 1.00[EUR][1000 genomes] |
| rs4650737 | 1.00[EUR][1000 genomes] |
| rs4650738 | 1.00[EUR][1000 genomes] |
| rs4651393 | 1.00[EUR][1000 genomes] |
| rs4651397 | 1.00[EUR][1000 genomes] |
| rs4651401 | 1.00[EUR][1000 genomes] |
| rs4651403 | 1.00[EUR][1000 genomes] |
| rs4651442 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60264525 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60781969 | 1.00[EUR][1000 genomes] |
| rs61553406 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6685421 | 1.00[EUR][1000 genomes] |
| rs73032419 | 1.00[EUR][1000 genomes] |
| rs73032430 | 1.00[EUR][1000 genomes] |
| rs73032442 | 1.00[EUR][1000 genomes] |
| rs73032445 | 1.00[EUR][1000 genomes] |
| rs73034615 | 1.00[EUR][1000 genomes] |
| rs73036233 | 1.00[EUR][1000 genomes] |
| rs73036254 | 1.00[EUR][1000 genomes] |
| rs73038926 | 1.00[EUR][1000 genomes] |
| rs73038929 | 1.00[EUR][1000 genomes] |
| rs73038933 | 1.00[EUR][1000 genomes] |
| rs73038939 | 1.00[EUR][1000 genomes] |
| rs73038947 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949473 | chr1:175151666-175391741 | Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv831948 | chr1:175229631-175407303 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
