Variant report

Variant	rs73038926
Chromosome Location	chr1:175183454-175183455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:175182697..175184583-chr1:175196137..175197916,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12066900	1.00[EUR][1000 genomes]
rs12074601	1.00[EUR][1000 genomes]
rs2157566	1.00[EUR][1000 genomes]
rs2861278	1.00[EUR][1000 genomes]
rs4650736	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4650737	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4650738	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4651393	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4651397	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4651401	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4651403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4651442	1.00[EUR][1000 genomes]
rs60264525	1.00[EUR][1000 genomes]
rs60781969	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61553406	1.00[EUR][1000 genomes]
rs6685421	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73032419	1.00[EUR][1000 genomes]
rs73032430	1.00[EUR][1000 genomes]
rs73032442	1.00[EUR][1000 genomes]
rs73032445	1.00[EUR][1000 genomes]
rs73034615	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73036233	1.00[EUR][1000 genomes]
rs73036254	1.00[EUR][1000 genomes]
rs73038929	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038933	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038939	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73038947	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73046091	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949473	chr1:175151666-175391741	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175178400-175191400	Weak transcription	Spleen	Spleen
2	chr1:175181200-175186800	Weak transcription	Fetal Thymus	thymus
3	chr1:175181600-175185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:175181800-175185000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:175181800-175185200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr1:175182000-175186400	Weak transcription	Primary B cells from cord blood	blood
7	chr1:175182400-175187800	Weak transcription	Primary T cells from cord blood	blood
8	chr1:175182600-175188200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:175183000-175186800	Weak transcription	Psoas Muscle	Psoas

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