Variant report

Variant	rs73041471
Chromosome Location	chr6:167342732-167342733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34850479	1.00[ASN][1000 genomes]
rs73041461	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73041462	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73041464	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73041468	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9295377	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs943688	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1022866	chr6:167108740-167345629	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv605327	chr6:167185674-167360389	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1027314	chr6:167194653-167355961	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv538542	chr6:167194653-167355961	Strong transcription Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv605332	chr6:167198027-167353701	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
10	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
11	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
12	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
13	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
14	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
15	esv3325880	chr6:167341762-167346360	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
16	esv3432200	chr6:167342462-167345660	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167318400-167343800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:167334000-167343600	Weak transcription	Fetal Brain Male	brain
3	chr6:167335400-167343800	Weak transcription	Right Atrium	heart
4	chr6:167335600-167346200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr6:167337400-167343000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:167337600-167350000	Weak transcription	Ovary	ovary
7	chr6:167337600-167363400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:167338200-167356000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:167339000-167343800	Strong transcription	GM12878-XiMat	blood
10	chr6:167339200-167344000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:167339200-167348400	Strong transcription	Primary T cells from cord blood	blood
12	chr6:167339400-167343800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:167340000-167358800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:167340000-167363000	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:167340000-167363000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:167340200-167342800	Strong transcription	Fetal Thymus	thymus
17	chr6:167340200-167343800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:167340200-167344200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr6:167340200-167344800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr6:167340200-167349800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:167340200-167354600	Strong transcription	Fetal Intestine Small	intestine
22	chr6:167340200-167362800	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr6:167340400-167343400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:167340400-167343800	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:167340400-167344600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr6:167340400-167357200	Strong transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:167340400-167363000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:167340600-167342800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:167340600-167343800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr6:167340600-167344400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr6:167340600-167345600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr6:167340600-167348400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:167340600-167353400	Strong transcription	HepG2	liver
34	chr6:167340600-167363000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:167340800-167343400	Strong transcription	Spleen	Spleen
36	chr6:167340800-167343600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:167340800-167343800	Weak transcription	Fetal Kidney	kidney
38	chr6:167340800-167343800	Weak transcription	Fetal Lung	lung
39	chr6:167340800-167344200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:167340800-167344600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr6:167340800-167350000	Weak transcription	Fetal Brain Female	brain
42	chr6:167340800-167359600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr6:167341000-167343600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr6:167341000-167349800	Weak transcription	Fetal Muscle Leg	muscle
45	chr6:167341000-167368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr6:167341200-167348800	Strong transcription	Thymus	Thymus
47	chr6:167341200-167368800	Weak transcription	Colon Smooth Muscle	Colon
48	chr6:167341400-167342800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr6:167341400-167344400	Strong transcription	Aorta	Aorta
50	chr6:167341400-167361400	Strong transcription	Rectal Mucosa Donor 31	rectum

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