Variant report

Variant	rs73041494
Chromosome Location	chr6:167366622-167366623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:167366100-167366837	HepG2	liver:	n/a	n/a
2	POLR2A	chr6:167366333-167366950	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:167365398-167366859	GM12878	blood:	n/a	n/a
4	HEY1	chr6:167366495-167367069	HepG2	liver:	n/a	n/a
5	WRNIP1	chr6:167365988-167366907	GM12878	blood:	n/a	n/a
6	MXI1	chr6:167366490-167366879	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:167364990..167367805-chr6:167369090..167372947,3	K562	blood:

Variant related genes	Relation type
RNASET2	TF binding region
ENSG00000026297	Chromatin interaction
ENSG00000249141	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2273746	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3798305	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73041488	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73041490	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73041491	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73041500	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73789707	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605260	chr6:166984094-167455139	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1019381	chr6:167090236-167558598	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538541	chr6:167090236-167558598	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
4	nsv948634	chr6:167200671-167838993	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
5	nsv482507	chr6:167282376-167474915	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
6	nsv532074	chr6:167320656-167781977	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
7	nsv1031039	chr6:167324021-167741439	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv538543	chr6:167324021-167741439	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
9	nsv1026972	chr6:167335031-167671042	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
10	nsv1034359	chr6:167359643-167384714	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:167341000-167368800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:167341200-167368800	Weak transcription	Colon Smooth Muscle	Colon
3	chr6:167342400-167368600	Weak transcription	Fetal Heart	heart
4	chr6:167344200-167368600	Weak transcription	Right Atrium	heart
5	chr6:167350600-167367600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:167352200-167368800	Weak transcription	Fetal Kidney	kidney
7	chr6:167354600-167368800	Weak transcription	HSMM	muscle
8	chr6:167354600-167369000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:167354600-167369000	Weak transcription	A549	lung
10	chr6:167356400-167366800	Strong transcription	Fetal Intestine Small	intestine
11	chr6:167360000-167368800	Weak transcription	Fetal Lung	lung
12	chr6:167360600-167368800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr6:167360600-167368800	Weak transcription	Fetal Muscle Leg	muscle
14	chr6:167360600-167369000	Weak transcription	Osteobl	bone
15	chr6:167361200-167369000	Weak transcription	Ovary	ovary
16	chr6:167361200-167369200	Weak transcription	Aorta	Aorta
17	chr6:167361800-167368600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:167361800-167369000	Weak transcription	Psoas Muscle	Psoas
19	chr6:167362200-167368800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:167363000-167368000	Genic enhancers	Primary monocytes fromperipheralblood	blood
21	chr6:167363200-167366800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:167363200-167368000	Genic enhancers	Primary neutrophils fromperipheralblood	blood
23	chr6:167363600-167368600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:167363600-167368800	Weak transcription	Brain Germinal Matrix	brain
25	chr6:167363800-167367600	Weak transcription	Small Intestine	intestine
26	chr6:167363800-167368800	Weak transcription	NHEK	skin
27	chr6:167364000-167366800	Strong transcription	Fetal Stomach	stomach
28	chr6:167364200-167367400	Weak transcription	Thymus	Thymus
29	chr6:167364200-167367800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:167364200-167368600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:167364200-167368600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:167364200-167368600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr6:167364200-167369000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:167364400-167368600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:167364400-167368600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr6:167364400-167368600	Weak transcription	Esophagus	oesophagus
37	chr6:167364400-167368600	Weak transcription	Lung	lung
38	chr6:167364400-167368600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr6:167364400-167368600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:167364800-167368600	Genic enhancers	Primary B cells from peripheral blood	blood
41	chr6:167364800-167368800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr6:167364800-167369000	Weak transcription	Stomach Mucosa	stomach
43	chr6:167364800-167369200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr6:167365000-167367000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:167365000-167367600	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr6:167365000-167368600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr6:167365000-167368600	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr6:167365000-167368600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:167365000-167368600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr6:167365000-167368600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links