Variant report

Variant	rs73043599
Chromosome Location	chr3:21458629-21458630
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1083091	0.85[ASN][1000 genomes]
rs1507814	0.81[ASN][1000 genomes]
rs1621650	0.83[ASN][1000 genomes]
rs1656662	0.83[ASN][1000 genomes]
rs1656666	0.81[ASN][1000 genomes]
rs1697711	0.83[ASN][1000 genomes]
rs1697713	0.83[ASN][1000 genomes]
rs180502	0.88[ASN][1000 genomes]
rs2276791	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs341864	0.88[ASN][1000 genomes]
rs341865	0.88[ASN][1000 genomes]
rs366609	0.87[ASN][1000 genomes]
rs388126	0.83[ASN][1000 genomes]
rs397440	0.83[ASN][1000 genomes]
rs405338	0.83[ASN][1000 genomes]
rs407886	0.83[ASN][1000 genomes]
rs411616	0.83[ASN][1000 genomes]
rs418192	0.88[ASN][1000 genomes]
rs423879	0.83[ASN][1000 genomes]
rs430203	0.83[ASN][1000 genomes]
rs430387	0.85[ASN][1000 genomes]
rs440905	0.85[ASN][1000 genomes]
rs442920	0.85[ASN][1000 genomes]
rs446992	0.83[ASN][1000 genomes]
rs56712576	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73043578	0.81[ASN][1000 genomes]
rs73043579	0.81[ASN][1000 genomes]
rs73043587	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs776642	0.85[ASN][1000 genomes]
rs800605	0.87[ASN][1000 genomes]
rs9866352	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834630	chr3:21311619-21491327	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1011516	chr3:21337788-21472093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1006471	chr3:21385627-21596955	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1000828	chr3:21399870-21565580	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536515	chr3:21399870-21565580	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2622490	chr3:21456922-21458634	Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
8	nsv238000	chr3:21457534-21465809	Strong transcription Enhancers Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21452600-21462600	Weak transcription	Aorta	Aorta
2	chr3:21453200-21475600	Weak transcription	Fetal Muscle Leg	muscle
3	chr3:21455000-21469000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr3:21455400-21459400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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