Variant report

Variant	rs73043737
Chromosome Location	chr3:24396544-24396545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24385070..24386967-chr3:24394985..24396979,2	K562	blood:
2	chr3:24395912..24398786-chr3:24427105..24429295,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1354599	1.00[AFR][1000 genomes]
rs1354600	1.00[AFR][1000 genomes]
rs1394763	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014547	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014561	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014584	1.00[ASN][1000 genomes]
rs55751089	1.00[ASN][1000 genomes]
rs56976952	1.00[ASN][1000 genomes]
rs59263745	1.00[AFR][1000 genomes]
rs73043725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73043726	1.00[ASN][1000 genomes]
rs73043728	1.00[ASN][1000 genomes]
rs73043733	1.00[ASN][1000 genomes]
rs73043736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73043745	1.00[ASN][1000 genomes]
rs73043748	1.00[ASN][1000 genomes]
rs73043750	1.00[ASN][1000 genomes]
rs73043760	1.00[ASN][1000 genomes]
rs73043761	1.00[ASN][1000 genomes]
rs73825626	1.00[AFR][1000 genomes]
rs73825627	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24360400-24418000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:24390400-24401000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:24391000-24398600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:24391200-24401000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:24393600-24397600	Weak transcription	Aorta	Aorta
6	chr3:24393600-24403800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:24394000-24396800	Weak transcription	HMEC	breast
8	chr3:24394000-24397000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:24394000-24399200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr3:24394000-24399400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:24394000-24403200	Weak transcription	NHDF-Ad	bronchial
12	chr3:24394000-24406600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:24394000-24406600	Weak transcription	Ovary	ovary
14	chr3:24394000-24406600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:24394000-24407800	Weak transcription	Pancreas	Pancrea
16	chr3:24394000-24407800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:24394000-24431400	Weak transcription	Gastric	stomach
18	chr3:24394200-24403800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:24394400-24403000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:24394800-24399200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:24394800-24401600	Weak transcription	Brain Substantia Nigra	brain
22	chr3:24395000-24399200	Weak transcription	Fetal Lung	lung
23	chr3:24395000-24404400	Weak transcription	Fetal Intestine Large	intestine
24	chr3:24395200-24397800	Weak transcription	Psoas Muscle	Psoas
25	chr3:24395200-24398400	Enhancers	K562	blood
26	chr3:24395200-24399200	Weak transcription	Fetal Kidney	kidney
27	chr3:24395200-24404400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr3:24396400-24399200	Weak transcription	Liver	Liver
29	chr3:24396400-24401600	Weak transcription	HepG2	liver

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