Variant report

Variant	rs73044024
Chromosome Location	chr19:35657334-35657335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35654052..35658593-chr19:35736953..35742683,9	K562	blood:
2	chr19:35653735..35656865-chr19:35656931..35659382,3	MCF-7	breast:
3	chr19:35655616..35658079-chr19:35755834..35757875,2	MCF-7	breast:
4	chr19:35606015..35607604-chr19:35656192..35659125,2	MCF-7	breast:
5	chr19:35652170..35655595-chr19:35655947..35659208,4	MCF-7	breast:
6	chr19:35653961..35658211-chr19:35756444..35760028,4	K562	blood:
7	chr19:35653833..35655711-chr19:35656998..35660022,4	K562	blood:
8	chr19:35656275..35658757-chr19:35668459..35673698,5	K562	blood:
9	chr19:35655231..35657834-chr19:35695851..35698454,2	MCF-7	breast:
10	chr19:35656896..35658640-chr19:35739040..35741411,2	MCF-7	breast:
11	chr19:35653961..35659020-chr19:35755691..35760689,8	K562	blood:

No data

Variant related genes	Relation type
ENSG00000105698	Chromatin interaction
ENSG00000089327	Chromatin interaction
ENSG00000089356	Chromatin interaction
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2073948	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55957448	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56050577	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56058408	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56370249	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59299730	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59325149	0.88[ASN][1000 genomes]
rs73044014	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73044015	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73044017	0.91[EUR][1000 genomes]
rs73044028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73044057	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73044071	0.88[ASN][1000 genomes]
rs73044076	0.88[ASN][1000 genomes]
rs73044081	0.86[EUR][1000 genomes]
rs73044083	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	esv2757694	chr19:35653642-35673333	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2758757	chr19:35653642-35673333	Genic enhancers Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35648000-35661600	Strong transcription	H1 Cell Line	embryonic stem cell
2	chr19:35648000-35661800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr19:35648200-35662800	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr19:35649400-35657400	Strong transcription	Primary T killer memory cells from peripheral blood	blood
5	chr19:35652000-35657400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr19:35652000-35657600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
7	chr19:35652000-35661800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
8	chr19:35652200-35657800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr19:35652200-35657800	ZNF genes & repeats	Stomach Smooth Muscle	stomach
10	chr19:35652200-35658000	ZNF genes & repeats	GM12878-XiMat	blood
11	chr19:35652200-35658200	ZNF genes & repeats	A549	lung
12	chr19:35652400-35657400	ZNF genes & repeats	Primary B cells from cord blood	blood
13	chr19:35652400-35657800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr19:35652400-35658400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr19:35652400-35658400	ZNF genes & repeats	Lung	lung
16	chr19:35652400-35658600	ZNF genes & repeats	Placenta	Placenta
17	chr19:35652600-35657400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr19:35653000-35658000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:35653200-35658000	ZNF genes & repeats	HMEC	breast
20	chr19:35653400-35657400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:35653400-35657600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:35653400-35658000	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr19:35653400-35663800	Weak transcription	Stomach Mucosa	stomach
24	chr19:35653600-35658000	ZNF genes & repeats	Osteobl	bone
25	chr19:35653600-35667400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr19:35653800-35658800	Strong transcription	Dnd41	blood
27	chr19:35653800-35659000	Strong transcription	Placenta Amnion	Placenta Amnion
28	chr19:35653800-35661400	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr19:35654600-35658000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr19:35654600-35658000	ZNF genes & repeats	NHEK	skin
31	chr19:35654800-35657600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:35654800-35657800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr19:35654800-35657800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr19:35654800-35658000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr19:35654800-35658000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr19:35654800-35658200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr19:35655000-35657600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr19:35655000-35657600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr19:35655000-35657600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
40	chr19:35655000-35657600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
41	chr19:35655000-35657800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
42	chr19:35655000-35658200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr19:35655200-35658000	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr19:35655200-35667600	Weak transcription	Colonic Mucosa	Colon
45	chr19:35655400-35657600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
46	chr19:35655600-35658800	Strong transcription	NHDF-Ad	bronchial
47	chr19:35655600-35659000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr19:35655600-35661400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr19:35655800-35658200	Strong transcription	HUVEC	blood vessel
50	chr19:35656200-35658800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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