Variant report

Variant	rs73047124
Chromosome Location	chr5:16658179-16658180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16657520..16659492-chr5:16660163..16661678,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12109300	1.00[AMR][1000 genomes]
rs12109865	1.00[AMR][1000 genomes]
rs12110160	1.00[AMR][1000 genomes]
rs73047110	1.00[AMR][1000 genomes]
rs73053779	1.00[AMR][1000 genomes]
rs73053793	1.00[AMR][1000 genomes]
rs73055712	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13219	chr5:16650304-16660144	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv597308	chr5:16655375-16658524	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16650000-16664600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:16652600-16663000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:16653800-16663600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:16655800-16664000	Weak transcription	Pancreas	Pancrea
5	chr5:16655800-16670600	Weak transcription	Esophagus	oesophagus
6	chr5:16657000-16658200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:16657000-16664000	Weak transcription	Fetal Brain Female	brain
8	chr5:16657000-16665600	Weak transcription	Osteobl	bone
9	chr5:16657000-16668000	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr5:16657200-16660400	Weak transcription	Placenta	Placenta
11	chr5:16657200-16662800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:16657200-16663800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:16657200-16663800	Weak transcription	HMEC	breast
14	chr5:16657400-16658400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:16657400-16663200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:16657400-16664000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:16657400-16665600	Weak transcription	NHDF-Ad	bronchial
18	chr5:16657600-16658800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:16657800-16666600	Weak transcription	Adipose Nuclei	Adipose
20	chr5:16658000-16663800	Weak transcription	NHEK	skin

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