Variant report

Variant	rs73053779
Chromosome Location	chr5:16642841-16642842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12109300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12109865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12110160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047110	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73047124	1.00[AMR][1000 genomes]
rs73053793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv436482	chr5:16635711-16655705	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16641600-16643400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:16642400-16643200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr5:16642400-16643400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:16642600-16643200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:16642600-16643400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:16642600-16643400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:16642800-16643200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:16642800-16643400	Enhancers	Brain Anterior Caudate	brain
9	chr5:16642800-16643400	Enhancers	Brain Cingulate Gyrus	brain
10	chr5:16642800-16643400	Enhancers	Brain Hippocampus Middle	brain
11	chr5:16642800-16643400	Enhancers	Brain Substantia Nigra	brain
12	chr5:16642800-16644800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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