Variant report

Variant	rs73047664
Chromosome Location	chr1:180595744-180595745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10914089	1.00[EUR][1000 genomes]
rs10914110	1.00[EUR][1000 genomes]
rs12064145	1.00[EUR][1000 genomes]
rs12087860	1.00[EUR][1000 genomes]
rs12088166	1.00[EUR][1000 genomes]
rs12094045	1.00[EUR][1000 genomes]
rs58972035	1.00[EUR][1000 genomes]
rs60694734	1.00[EUR][1000 genomes]
rs6659019	1.00[EUR][1000 genomes]
rs73034866	1.00[EUR][1000 genomes]
rs73036531	1.00[EUR][1000 genomes]
rs73036535	1.00[EUR][1000 genomes]
rs73036573	1.00[EUR][1000 genomes]
rs73040986	1.00[EUR][1000 genomes]
rs73047646	1.00[EUR][1000 genomes]
rs73048291	1.00[EUR][1000 genomes]
rs73048292	1.00[EUR][1000 genomes]
rs73052327	1.00[EUR][1000 genomes]
rs7512811	1.00[EUR][1000 genomes]
rs7524525	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180581800-180600600	Weak transcription	Fetal Heart	heart
2	chr1:180591400-180596600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:180593200-180601000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:180593400-180599400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:180593400-180600200	Weak transcription	K562	blood
6	chr1:180593600-180599600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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