Variant report

Variant	rs73036535
Chromosome Location	chr1:180739707-180739708
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10914089	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10914109	0.91[AFR][1000 genomes]
rs10914110	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063811	0.82[AFR][1000 genomes]
rs12064145	1.00[EUR][1000 genomes]
rs12073959	0.86[AFR][1000 genomes]
rs12075181	0.86[AFR][1000 genomes]
rs12080368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12087860	1.00[EUR][1000 genomes]
rs12088166	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12094045	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12238979	0.82[AFR][1000 genomes]
rs12240182	0.82[AFR][1000 genomes]
rs13375018	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58972035	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60694734	1.00[EUR][1000 genomes]
rs6659019	1.00[EUR][1000 genomes]
rs6662788	1.00[EUR][1000 genomes]
rs73034866	1.00[EUR][1000 genomes]
rs73036505	0.91[AFR][1000 genomes]
rs73036508	0.91[AFR][1000 genomes]
rs73036531	1.00[EUR][1000 genomes]
rs73036573	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73040986	1.00[EUR][1000 genomes]
rs73047646	1.00[EUR][1000 genomes]
rs73047664	1.00[EUR][1000 genomes]
rs73047764	1.00[EUR][1000 genomes]
rs73047767	1.00[EUR][1000 genomes]
rs7355147	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7512811	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7524525	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7550861	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7553766	0.82[AFR][1000 genomes]
rs7556291	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180713400-180742200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:180714800-180740600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:180715400-180747600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:180722600-180751000	Weak transcription	Left Ventricle	heart
6	chr1:180731800-180742400	Weak transcription	NHLF	lung
7	chr1:180732600-180740600	Weak transcription	HSMM	muscle
8	chr1:180734600-180739800	Weak transcription	Fetal Heart	heart
9	chr1:180734800-180742200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:180736800-180740600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr1:180738000-180751200	Weak transcription	Brain Anterior Caudate	brain
12	chr1:180739000-180740200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:180739200-180739800	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr1:180739200-180739800	Enhancers	Dnd41	blood
15	chr1:180739200-180740200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr1:180739400-180740200	Enhancers	Psoas Muscle	Psoas
17	chr1:180739600-180740000	Flanking Active TSS	GM12878-XiMat	blood
18	chr1:180739600-180740200	Enhancers	Fetal Brain Female	brain

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