Variant report

Variant	rs12075181
Chromosome Location	chr1:180696340-180696341
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10914067	1.00[CEU][hapmap];0.88[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10914089	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs10914109	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10914110	0.93[AFR][1000 genomes]
rs10914126	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11487340	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12060106	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12063811	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12073959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075718	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12079057	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12080368	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12084966	0.87[EUR][1000 genomes]
rs12088166	0.85[AFR][1000 genomes]
rs12094045	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs12238979	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12240182	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374649	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs28556586	1.00[EUR][1000 genomes]
rs58972035	0.84[AFR][1000 genomes]
rs6425649	1.00[CEU][hapmap]
rs6671675	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6692545	1.00[CEU][hapmap];0.90[YRI][hapmap];1.00[EUR][1000 genomes]
rs6700702	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73036505	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036508	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73036535	0.86[AFR][1000 genomes]
rs73036573	0.93[AFR][1000 genomes]
rs73047686	1.00[EUR][1000 genomes]
rs73047695	1.00[EUR][1000 genomes]
rs73049484	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73049487	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73051218	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73051239	0.91[AMR][1000 genomes]
rs7355147	1.00[YRI][hapmap]
rs7512811	0.93[AFR][1000 genomes]
rs7524525	0.93[AFR][1000 genomes]
rs7550861	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7553766	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7556291	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180684800-180697800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:180687000-180700400	Weak transcription	K562	blood
3	chr1:180691400-180701800	Weak transcription	Left Ventricle	heart
4	chr1:180691600-180697000	Weak transcription	Psoas Muscle	Psoas
5	chr1:180692200-180699800	Weak transcription	Aorta	Aorta
6	chr1:180692600-180697400	Weak transcription	Primary B cells from cord blood	blood
7	chr1:180695200-180697600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:180695400-180698200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links