The 2.0 version of rSNPBase

Variant report

Variant rs12080368
Chromosome Location chr1:180826552-180826553
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180773400-180849200 Weak transcription Skeletal Muscle Female skeletal muscle
2 chr1:180773800-180853200 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr1:180775000-180831600 Weak transcription Brain Hippocampus Middle brain
4 chr1:180779800-180850800 Weak transcription Small Intestine intestine
5 chr1:180796400-180851000 Weak transcription Fetal Intestine Small intestine
6 chr1:180796600-180827200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:180796800-180827400 Weak transcription NHEK skin
8 chr1:180796800-180831600 Weak transcription A549 lung
9 chr1:180802600-180833000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr1:180802600-180834600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
11 chr1:180803600-180843200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:180804800-180842800 Weak transcription Duodenum Mucosa Duodenum
13 chr1:180805000-180829600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
14 chr1:180805800-180835000 Weak transcription Fetal Intestine Large intestine
15 chr1:180805800-180881000 Weak transcription Aorta Aorta
16 chr1:180807200-180832800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:180812200-180831400 Weak transcription Fetal Lung lung
18 chr1:180812200-180867000 Weak transcription Ovary ovary
19 chr1:180812400-180830800 Weak transcription Fetal Brain Female brain
20 chr1:180812600-180835000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr1:180818600-180833200 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr1:180819200-180851000 Weak transcription Fetal Brain Male brain
23 chr1:180821200-180842200 Weak transcription Primary B cells from cord blood blood
24 chr1:180822000-180833800 Weak transcription Primary T regulatory cells fromperipheralblood blood
25 chr1:180822000-180842200 Weak transcription Primary B cells from peripheral blood blood
26 chr1:180822000-180862800 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr1:180822400-180833000 Weak transcription Primary T cells fromperipheralblood blood
28 chr1:180822800-180862800 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:180823000-180827400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr1:180823000-180854600 Weak transcription Primary T helper naive cells from peripheral blood blood
31 chr1:180823200-180832800 Weak transcription Primary T helper cells PMA-I stimulated --
32 chr1:180823200-180832800 Weak transcription Primary T helper cells fromperipheralblood blood
33 chr1:180823400-180828200 Weak transcription Brain Germinal Matrix brain
34 chr1:180823400-180843000 Weak transcription Primary T helper naive cells fromperipheralblood blood
35 chr1:180823600-180827400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
36 chr1:180823600-180831400 Weak transcription Duodenum Smooth Muscle Duodenum
37 chr1:180823600-180833200 Weak transcription Dnd41 blood
38 chr1:180823600-180835000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:180823600-180847800 Weak transcription Primary T cells from cord blood blood
40 chr1:180823600-180860000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
41 chr1:180823800-180832200 Weak transcription Fetal Stomach stomach
42 chr1:180823800-180833200 Weak transcription Adipose Nuclei Adipose
43 chr1:180823800-180833400 Weak transcription iPS-18 Cell Line embryonic stem cell
44 chr1:180823800-180851000 Weak transcription Fetal Kidney kidney
45 chr1:180823800-180851400 Weak transcription Pancreas Pancrea
46 chr1:180823800-180862600 Weak transcription Fetal Adrenal Gland Adrenal Gland
47 chr1:180824000-180826600 Weak transcription Primary hematopoietic stem cells short term culture blood
48 chr1:180824000-180826600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr1:180824000-180826800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
50 chr1:180824000-180827200 Weak transcription Primary hematopoietic stem cells blood

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Last update: Aug 31, 2015