Variant report

Variant	rs73050258
Chromosome Location	chr7:3131360-3131361
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16870732	0.91[ASN][1000 genomes]
rs1984724	0.84[ASN][1000 genomes]
rs67787789	0.90[ASN][1000 genomes]
rs73042197	0.80[ASN][1000 genomes]
rs73044338	0.84[ASN][1000 genomes]
rs73050252	0.99[ASN][1000 genomes]
rs73050267	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7456058	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7788891	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv887319	chr7:3099853-3134593	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv887320	chr7:3110446-3134593	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv605875	chr7:3117801-3134593	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1020680	chr7:3125512-3204521	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
13	nsv1027945	chr7:3125512-3208071	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3128800-3131400	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr7:3128800-3131600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr7:3128800-3131600	Enhancers	Primary T killer memory cells from peripheral blood	blood
4	chr7:3128800-3132200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr7:3128800-3134200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr7:3128800-3134400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr7:3129000-3131800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:3129000-3131800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr7:3129200-3131800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr7:3129400-3131400	Enhancers	Primary T cells from cord blood	blood
11	chr7:3129400-3134200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr7:3129600-3132000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr7:3129600-3134600	Enhancers	Fetal Thymus	thymus
14	chr7:3130200-3134400	Enhancers	Primary B cells from peripheral blood	blood
15	chr7:3130200-3134400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:3130600-3133200	Enhancers	Primary hematopoietic stem cells	blood
17	chr7:3130600-3134200	Enhancers	Primary B cells from cord blood	blood
18	chr7:3130800-3131800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:3131000-3131600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:3131000-3132000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr7:3131000-3132400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:3131000-3132600	Enhancers	Spleen	Spleen
23	chr7:3131000-3133200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr7:3131200-3131800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
25	chr7:3131200-3132200	Weak transcription	Thymus	Thymus
26	chr7:3131200-3134000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr7:3131200-3134400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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