Variant report

Variant	rs73057505
Chromosome Location	chr5:14189796-14189797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:14143338..14144978-chr5:14188286..14191627,3	MCF-7	breast:
2	chr5:14186990..14191289-chr5:14196188..14199111,4	MCF-7	breast:
3	chr5:14188839..14190409-chr5:14192288..14195221,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000038382	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11958958	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903280	0.87[AMR][1000 genomes]
rs16903317	1.00[AMR][1000 genomes]
rs16903319	1.00[AMR][1000 genomes]
rs16903330	0.87[AMR][1000 genomes]
rs59032427	0.87[AMR][1000 genomes]
rs60615600	0.87[AMR][1000 genomes]
rs61737132	0.87[AMR][1000 genomes]
rs62344640	0.99[AFR][1000 genomes]
rs6891552	0.87[AMR][1000 genomes]
rs73055570	1.00[AMR][1000 genomes]
rs73055575	1.00[AMR][1000 genomes]
rs73055577	1.00[AMR][1000 genomes]
rs73055578	1.00[AMR][1000 genomes]
rs73055592	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057508	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057521	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057526	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057554	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057562	1.00[AMR][1000 genomes]
rs73057593	0.87[AMR][1000 genomes]
rs73057602	0.87[AMR][1000 genomes]
rs73059545	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516415	chr5:13788886-14210897	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv534466	chr5:13847044-14246208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv1830112	chr5:14147376-14222601	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825924	chr5:14147376-14270450	Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv1792551	chr5:14180257-14202590	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14175000-14191600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:14177400-14191800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:14179200-14189800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr5:14181400-14189800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr5:14181400-14191800	Enhancers	Fetal Heart	heart
6	chr5:14182000-14190200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:14183600-14193000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr5:14184000-14191400	Weak transcription	Fetal Intestine Large	intestine
9	chr5:14184400-14190000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:14184400-14197200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:14184600-14202600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:14185000-14190000	Enhancers	Rectal Smooth Muscle	rectum
13	chr5:14185600-14194200	Enhancers	NHDF-Ad	bronchial
14	chr5:14185800-14189800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr5:14185800-14189800	Weak transcription	Lung	lung
16	chr5:14185800-14190000	Weak transcription	Pancreas	Pancrea
17	chr5:14185800-14190800	Enhancers	HSMMtube	muscle
18	chr5:14186000-14189800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr5:14186000-14189800	Weak transcription	Gastric	stomach
20	chr5:14186000-14190600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr5:14186000-14199800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr5:14186000-14200000	Weak transcription	Esophagus	oesophagus
23	chr5:14186200-14190000	Weak transcription	Fetal Brain Male	brain
24	chr5:14186200-14190200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:14186400-14189800	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:14186400-14189800	Weak transcription	Stomach Mucosa	stomach
27	chr5:14186400-14190800	Enhancers	NH-A	brain
28	chr5:14186400-14190800	Enhancers	NHLF	lung
29	chr5:14186600-14190000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr5:14186600-14190200	Weak transcription	Fetal Stomach	stomach
31	chr5:14186600-14190400	Weak transcription	Fetal Lung	lung
32	chr5:14186600-14190800	Enhancers	Osteobl	bone
33	chr5:14186600-14191200	Weak transcription	Placenta	Placenta
34	chr5:14186600-14196600	Weak transcription	Brain Substantia Nigra	brain
35	chr5:14186800-14189800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:14186800-14189800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:14186800-14189800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:14186800-14189800	Enhancers	Hela-S3	cervix
39	chr5:14186800-14190000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr5:14186800-14190400	Weak transcription	Brain Germinal Matrix	brain
41	chr5:14186800-14190800	Weak transcription	Brain Angular Gyrus	brain
42	chr5:14187000-14189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr5:14187000-14189800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr5:14187000-14189800	Weak transcription	Left Ventricle	heart
45	chr5:14187200-14189800	Weak transcription	Ovary	ovary
46	chr5:14187200-14189800	Weak transcription	Psoas Muscle	Psoas
47	chr5:14187200-14190000	Flanking Active TSS	A549	lung
48	chr5:14187200-14190800	Enhancers	HSMM	muscle
49	chr5:14187200-14192200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr5:14187200-14193800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links