Variant report

Variant	rs73057526
Chromosome Location	chr5:14202793-14202794
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:14143487..14145743-chr5:14202721..14205198,2	MCF-7	breast:
2	chr5:14142056..14144734-chr5:14202359..14205545,3	MCF-7	breast:
3	chr5:14201198..14203758-chr5:14208446..14210570,2	K562	blood:

Variant related genes	Relation type
ENSG00000038382	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11958958	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903280	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16903317	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16903330	0.87[AMR][1000 genomes]
rs59032427	0.87[AMR][1000 genomes]
rs60615600	0.87[AMR][1000 genomes]
rs61737132	0.87[AMR][1000 genomes]
rs62344640	0.83[AFR][1000 genomes]
rs6891552	0.87[AMR][1000 genomes]
rs73055570	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055575	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055577	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055578	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055592	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055595	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055596	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055600	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73055601	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057505	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057508	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057511	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057512	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057554	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057562	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73057593	0.87[AMR][1000 genomes]
rs73057602	0.87[AMR][1000 genomes]
rs73059545	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516415	chr5:13788886-14210897	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv534466	chr5:13847044-14246208	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
3	esv1830112	chr5:14147376-14222601	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1825924	chr5:14147376-14270450	Flanking Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14188800-14204000	Weak transcription	Fetal Kidney	kidney
2	chr5:14189000-14203600	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr5:14192200-14208000	Weak transcription	Hela-S3	cervix
4	chr5:14197000-14203800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr5:14197000-14204800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:14197400-14203800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr5:14197400-14203800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:14197600-14202800	Weak transcription	Fetal Brain Female	brain
9	chr5:14197600-14203800	Weak transcription	Gastric	stomach
10	chr5:14197600-14204800	Weak transcription	Fetal Lung	lung
11	chr5:14198000-14203400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:14198000-14203800	Weak transcription	NHEK	skin
13	chr5:14198600-14203800	Weak transcription	HMEC	breast
14	chr5:14198600-14204600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:14198800-14203400	Enhancers	A549	lung
16	chr5:14199600-14204000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:14199600-14204800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:14199600-14205000	Enhancers	HSMMtube	muscle
19	chr5:14199600-14205000	Enhancers	Osteobl	bone
20	chr5:14200200-14203600	Weak transcription	HepG2	liver
21	chr5:14200400-14203800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:14200400-14203800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr5:14200400-14203800	Weak transcription	Colonic Mucosa	Colon
24	chr5:14200400-14204000	Weak transcription	Brain Hippocampus Middle	brain
25	chr5:14200400-14204200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:14200400-14204400	Weak transcription	Brain Substantia Nigra	brain
27	chr5:14200400-14204800	Weak transcription	Aorta	Aorta
28	chr5:14200600-14202800	Weak transcription	Adipose Nuclei	Adipose
29	chr5:14200600-14202800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr5:14200600-14203800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr5:14200600-14203800	Weak transcription	Brain Anterior Caudate	brain
32	chr5:14200600-14203800	Weak transcription	Esophagus	oesophagus
33	chr5:14200600-14203800	Weak transcription	Lung	lung
34	chr5:14200600-14203800	Weak transcription	Pancreas	Pancrea
35	chr5:14200600-14203800	Weak transcription	Right Atrium	heart
36	chr5:14200600-14203800	Weak transcription	Right Ventricle	heart
37	chr5:14200600-14203800	Weak transcription	Spleen	Spleen
38	chr5:14200600-14204000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr5:14200600-14204400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr5:14200600-14204800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:14200600-14204800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr5:14200600-14217000	Weak transcription	Fetal Brain Male	brain
43	chr5:14200800-14202800	Weak transcription	Brain Germinal Matrix	brain
44	chr5:14200800-14202800	Enhancers	HSMM	muscle
45	chr5:14200800-14203200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr5:14200800-14203600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr5:14200800-14204000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr5:14200800-14204400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:14200800-14204400	Weak transcription	Fetal Stomach	stomach
50	chr5:14200800-14204600	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links