Variant report

Variant	rs7305832
Chromosome Location	chr12:66943027-66943028
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:66932403..66936111-chr12:66940757..66944323,3	K562	blood:
2	chr12:66942264..66943151-chr12:67082787..67083333,2	MCF-7	breast:
3	chr12:66940803..66943368-chr12:66944201..66946459,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155974	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10506486	0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs10878456	0.88[ASN][1000 genomes]
rs10878457	0.89[ASN][1000 genomes]
rs11176275	0.96[CHD][hapmap];0.94[JPT][hapmap];0.92[MKK][hapmap];0.91[ASN][1000 genomes]
rs11176281	0.89[ASN][1000 genomes]
rs11176285	0.89[ASN][1000 genomes]
rs11176286	0.89[ASN][1000 genomes]
rs11176287	0.89[ASN][1000 genomes]
rs11176288	0.89[ASN][1000 genomes]
rs11176289	0.89[ASN][1000 genomes]
rs11176290	0.88[ASN][1000 genomes]
rs11176291	0.88[ASN][1000 genomes]
rs11176292	0.89[ASN][1000 genomes]
rs11176293	0.89[ASN][1000 genomes]
rs11176294	0.89[ASN][1000 genomes]
rs11611371	0.95[ASN][1000 genomes]
rs11614253	0.95[ASN][1000 genomes]
rs12314237	0.89[ASN][1000 genomes]
rs12317142	0.96[CHD][hapmap];0.94[JPT][hapmap];0.92[MKK][hapmap];0.91[ASN][1000 genomes]
rs12424156	0.89[ASN][1000 genomes]
rs12424353	0.91[ASN][1000 genomes]
rs12424354	0.91[ASN][1000 genomes]
rs12424519	0.89[ASN][1000 genomes]
rs12424551	0.95[ASN][1000 genomes]
rs12425766	0.91[ASN][1000 genomes]
rs12426601	0.91[ASN][1000 genomes]
rs12426683	0.91[ASN][1000 genomes]
rs12581890	0.91[ASN][1000 genomes]
rs12812897	0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs12819058	0.96[CHD][hapmap];0.94[JPT][hapmap];0.88[MKK][hapmap];0.91[ASN][1000 genomes]
rs12819736	0.89[ASN][1000 genomes]
rs12822414	0.80[ASN][1000 genomes]
rs12827508	0.82[ASN][1000 genomes]
rs12833815	0.89[ASN][1000 genomes]
rs1493491	0.95[ASN][1000 genomes]
rs1493492	0.95[ASN][1000 genomes]
rs17181501	0.91[ASN][1000 genomes]
rs17181508	0.91[ASN][1000 genomes]
rs17181587	0.86[ASN][1000 genomes]
rs17779336	0.89[ASN][1000 genomes]
rs17779342	0.91[ASN][1000 genomes]
rs17779375	0.89[ASN][1000 genomes]
rs2870852	0.91[ASN][1000 genomes]
rs2870853	0.91[ASN][1000 genomes]
rs2870854	0.91[ASN][1000 genomes]
rs2870855	0.89[ASN][1000 genomes]
rs2870856	0.89[ASN][1000 genomes]
rs34013266	0.92[ASN][1000 genomes]
rs34274845	0.91[ASN][1000 genomes]
rs34491645	0.91[ASN][1000 genomes]
rs34827947	0.87[ASN][1000 genomes]
rs35544210	0.91[ASN][1000 genomes]
rs35714476	0.90[ASN][1000 genomes]
rs35881203	0.91[ASN][1000 genomes]
rs3970920	0.81[ASN][1000 genomes]
rs55921723	0.91[ASN][1000 genomes]
rs55952241	0.91[ASN][1000 genomes]
rs56391230	0.80[ASN][1000 genomes]
rs57694406	0.89[ASN][1000 genomes]
rs7134262	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs7134983	0.91[ASN][1000 genomes]
rs7135418	0.91[ASN][1000 genomes]
rs7135606	0.91[ASN][1000 genomes]
rs7137153	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs71452320	0.85[ASN][1000 genomes]
rs7305949	1.00[CEU][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7306716	0.91[ASN][1000 genomes]
rs73323178	0.89[ASN][1000 genomes]
rs73323181	0.89[ASN][1000 genomes]
rs7485670	0.84[ASN][1000 genomes]
rs7966602	0.95[ASN][1000 genomes]
rs7968255	0.96[CHD][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7968344	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7970748	0.95[ASN][1000 genomes]
rs7976866	0.83[CHD][hapmap]
rs9706163	0.95[ASN][1000 genomes]
rs987688	0.96[CHD][hapmap];0.94[JPT][hapmap];0.88[MKK][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052503	chr12:66293898-67269495	Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv541515	chr12:66293898-67269495	Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1040682	chr12:66750103-67328053	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv832447	chr12:66785814-66990029	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv469459	chr12:66854354-66950289	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv559206	chr12:66854354-66950289	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv832449	chr12:66885819-67069953	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2757508	chr12:66905405-66980180	Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv2759906	chr12:66905405-66980180	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv3325978	chr12:66920993-67016708	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv34782	chr12:66933542-66971398	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:66942000-66943600	Enhancers	Primary B cells from peripheral blood	blood
2	chr12:66943000-66944600	Weak transcription	GM12878-XiMat	blood

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