Variant report

Variant	rs73058398
Chromosome Location	chr1:185737086-185737087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185735098..185737395-chr1:185742780..185745714,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10489713	1.00[ASN][1000 genomes]
rs10489714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1124755	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124756	1.00[ASN][1000 genomes]
rs12164583	1.00[EUR][1000 genomes]
rs1321671	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321672	1.00[ASN][1000 genomes]
rs1321673	1.00[ASN][1000 genomes]
rs1321674	1.00[ASN][1000 genomes]
rs1321675	1.00[ASN][1000 genomes]
rs16824426	1.00[ASN][1000 genomes]
rs16824427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16824428	1.00[ASN][1000 genomes]
rs16824451	1.00[ASN][1000 genomes]
rs16824455	1.00[ASN][1000 genomes]
rs16824458	1.00[ASN][1000 genomes]
rs16824465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1825398	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28666501	1.00[EUR][1000 genomes]
rs28754345	1.00[EUR][1000 genomes]
rs55683049	1.00[EUR][1000 genomes]
rs55954704	1.00[EUR][1000 genomes]
rs57123319	1.00[EUR][1000 genomes]
rs57775662	1.00[EUR][1000 genomes]
rs58131117	0.86[EUR][1000 genomes]
rs58135888	1.00[EUR][1000 genomes]
rs58140638	1.00[EUR][1000 genomes]
rs58159343	1.00[EUR][1000 genomes]
rs58449767	1.00[EUR][1000 genomes]
rs58597777	1.00[EUR][1000 genomes]
rs58609803	1.00[EUR][1000 genomes]
rs60134058	1.00[EUR][1000 genomes]
rs61088604	1.00[EUR][1000 genomes]
rs61103306	1.00[EUR][1000 genomes]
rs61315386	1.00[EUR][1000 genomes]
rs6425001	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6425006	1.00[EUR][1000 genomes]
rs6657554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6676765	0.86[EUR][1000 genomes]
rs6676937	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677167	1.00[ASN][1000 genomes]
rs6685093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686790	1.00[EUR][1000 genomes]
rs6696804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698721	0.86[EUR][1000 genomes]
rs73054407	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73058401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060462	1.00[EUR][1000 genomes]
rs73060467	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060474	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73070601	1.00[EUR][1000 genomes]
rs73072006	1.00[EUR][1000 genomes]
rs73072009	1.00[EUR][1000 genomes]
rs73072046	1.00[EUR][1000 genomes]
rs73072051	1.00[EUR][1000 genomes]
rs73072052	1.00[EUR][1000 genomes]
rs73072056	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072059	1.00[EUR][1000 genomes]
rs74133680	1.00[EUR][1000 genomes]
rs74134381	1.00[ASN][1000 genomes]
rs7541361	0.86[EUR][1000 genomes]
rs7547368	0.86[EUR][1000 genomes]
rs959688	1.00[ASN][1000 genomes]
rs959689	1.00[ASN][1000 genomes]
rs959690	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185730200-185745000	Weak transcription	Fetal Kidney	kidney
2	chr1:185732400-185742800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:185735600-185743400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr1:185736000-185747000	Weak transcription	Aorta	Aorta
5	chr1:185736400-185737200	Enhancers	Fetal Lung	lung
6	chr1:185736600-185737200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:185736600-185737400	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:185736600-185737600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr1:185736800-185737200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr1:185737000-185744600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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