Variant report

Variant	rs6425006
Chromosome Location	chr1:185796778-185796779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185793023..185794662-chr1:185796349..185798124,2	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10489714	1.00[EUR][1000 genomes]
rs1124755	1.00[EUR][1000 genomes]
rs12164583	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239002	0.82[ASW][hapmap];1.00[MEX][hapmap]
rs1321671	1.00[EUR][1000 genomes]
rs1322354	0.81[MKK][hapmap]
rs1407428	1.00[MEX][hapmap]
rs16824427	1.00[EUR][1000 genomes]
rs16824465	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs16824658	0.81[MKK][hapmap]
rs16824665	0.81[MKK][hapmap]
rs16824669	0.83[MKK][hapmap]
rs16824678	0.83[MKK][hapmap]
rs16824688	0.83[MKK][hapmap]
rs1825398	1.00[EUR][1000 genomes]
rs28666501	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28754345	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55683049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55954704	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57123319	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57775662	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58131117	0.86[EUR][1000 genomes]
rs58135888	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58140638	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58159343	1.00[EUR][1000 genomes]
rs58449767	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58597777	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58609803	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60134058	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61002359	0.85[AMR][1000 genomes]
rs61088604	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61103306	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61315386	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6425001	1.00[EUR][1000 genomes]
rs6657554	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6666950	0.83[MKK][hapmap]
rs6676765	0.86[EUR][1000 genomes]
rs6676937	1.00[EUR][1000 genomes]
rs6685093	1.00[EUR][1000 genomes]
rs6686790	1.00[EUR][1000 genomes]
rs6689228	1.00[MEX][hapmap]
rs6690559	1.00[MEX][hapmap]
rs6696804	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6698721	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs73054407	1.00[EUR][1000 genomes]
rs73058398	1.00[EUR][1000 genomes]
rs73058399	1.00[EUR][1000 genomes]
rs73058401	1.00[EUR][1000 genomes]
rs73060462	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73060467	1.00[EUR][1000 genomes]
rs73060474	1.00[EUR][1000 genomes]
rs73060485	0.85[AMR][1000 genomes]
rs73070601	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072006	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072009	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072046	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072051	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73072052	1.00[EUR][1000 genomes]
rs73072056	1.00[EUR][1000 genomes]
rs73072059	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74133680	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518783	0.83[MKK][hapmap]
rs7540773	1.00[MEX][hapmap]
rs7541361	0.86[EUR][1000 genomes]
rs7547368	0.86[EUR][1000 genomes]
rs7554996	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185795800-185797000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185795800-185803400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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