Variant report

Variant	rs61002359
Chromosome Location	chr1:185787522-185787523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12164583	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28666501	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28754345	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55683049	0.85[AMR][1000 genomes]
rs55954704	1.00[AMR][1000 genomes]
rs57123319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57775662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58135888	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58140638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58449767	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs58597777	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58609803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60134058	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61088604	1.00[AMR][1000 genomes]
rs61103306	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61315386	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs6425006	0.85[AMR][1000 genomes]
rs73060462	1.00[AMR][1000 genomes]
rs73060485	1.00[AMR][1000 genomes]
rs73070601	1.00[AMR][1000 genomes]
rs73072006	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072009	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072046	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072051	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072052	0.93[AFR][1000 genomes]
rs73072059	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74133680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185782800-185787800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185787200-185792400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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