Variant report

Variant	rs73060485
Chromosome Location	chr1:185745124-185745125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10737264	1.00[EUR][1000 genomes]
rs12164583	1.00[AMR][1000 genomes]
rs1322357	1.00[EUR][1000 genomes]
rs16824414	1.00[EUR][1000 genomes]
rs28666501	1.00[AMR][1000 genomes]
rs28754345	1.00[AMR][1000 genomes]
rs55683049	0.85[AMR][1000 genomes]
rs55954704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57123319	1.00[AMR][1000 genomes]
rs57775662	1.00[AMR][1000 genomes]
rs58135888	1.00[AMR][1000 genomes]
rs58140638	1.00[AMR][1000 genomes]
rs58449767	0.92[AMR][1000 genomes]
rs58597777	1.00[AMR][1000 genomes]
rs58609803	1.00[AMR][1000 genomes]
rs60134058	1.00[AMR][1000 genomes]
rs61002359	1.00[AMR][1000 genomes]
rs61088604	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61103306	1.00[AMR][1000 genomes]
rs61315386	0.92[AMR][1000 genomes]
rs6425006	0.85[AMR][1000 genomes]
rs6668691	1.00[EUR][1000 genomes]
rs73060462	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73070601	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73072006	1.00[AMR][1000 genomes]
rs73072009	1.00[AMR][1000 genomes]
rs73072046	1.00[AMR][1000 genomes]
rs73072051	1.00[AMR][1000 genomes]
rs73072059	1.00[AMR][1000 genomes]
rs74133680	1.00[AMR][1000 genomes]
rs74135305	1.00[EUR][1000 genomes]
rs74135306	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185736000-185747000	Weak transcription	Aorta	Aorta
2	chr1:185737800-185758800	Weak transcription	Fetal Lung	lung
3	chr1:185743200-185746000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:185743600-185745200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:185743600-185747000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:185743800-185745400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:185744000-185755000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:185744600-185745200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr1:185744800-185745200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:185744800-185745600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr1:185745000-185745200	Enhancers	Fetal Kidney	kidney
12	chr1:185745000-185745400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:185745000-185746000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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