Variant report

Variant	rs1322354
Chromosome Location	chr1:185866238-185866239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185864902..185867350-chr1:185868645..185870866,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10465478	1.00[EUR][1000 genomes]
rs10465499	1.00[EUR][1000 genomes]
rs12239587	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239922	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239929	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1322355	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1322356	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13375391	1.00[EUR][1000 genomes]
rs16824368	1.00[EUR][1000 genomes]
rs16824645	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824657	0.80[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824658	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824663	0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824665	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824668	0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824669	0.87[LWK][hapmap];0.97[MKK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824673	1.00[EUR][1000 genomes]
rs16824678	0.92[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824688	0.92[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824692	0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824719	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824725	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824728	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824729	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824732	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824736	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824741	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824744	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951512	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951513	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951515	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1951516	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41533044	1.00[EUR][1000 genomes]
rs55678382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55943726	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55975103	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182901	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57103984	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57289095	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57454743	1.00[EUR][1000 genomes]
rs58063730	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58437418	1.00[EUR][1000 genomes]
rs59787112	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59818099	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs61261990	1.00[EUR][1000 genomes]
rs6425006	0.81[MKK][hapmap]
rs6425008	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664313	1.00[ASW][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664384	0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6666206	0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6666950	0.91[ASW][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6667046	0.87[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6679622	0.80[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6679893	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6689494	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6689783	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6690968	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6701167	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6703739	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73054454	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73054465	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73056300	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058203	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058206	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058209	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058214	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058224	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058243	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73058250	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062122	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062125	0.82[AFR][1000 genomes]
rs73062132	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062134	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062135	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062140	1.00[EUR][1000 genomes]
rs73062143	1.00[AMR][1000 genomes]
rs73062161	1.00[EUR][1000 genomes]
rs73062166	1.00[EUR][1000 genomes]
rs74134212	1.00[EUR][1000 genomes]
rs744737	1.00[EUR][1000 genomes]
rs7518783	0.86[LWK][hapmap];0.97[MKK][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7544887	0.88[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9628634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185863400-185868000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185865800-185866600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:185866000-185866800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:185866200-185866400	Enhancers	HUVEC	blood vessel
5	chr1:185866200-185866600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr1:185866200-185866600	Enhancers	Hela-S3	cervix
7	chr1:185866200-185866600	Enhancers	NH-A	brain
8	chr1:185866200-185866800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:185866200-185867200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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