Variant report

Variant	rs55943726
Chromosome Location	chr1:185880929-185880930
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10449224	1.00[EUR][1000 genomes]
rs10465495	1.00[EUR][1000 genomes]
rs10465496	1.00[EUR][1000 genomes]
rs10465497	1.00[EUR][1000 genomes]
rs10465500	0.83[EUR][1000 genomes]
rs12061058	1.00[EUR][1000 genomes]
rs12066427	1.00[EUR][1000 genomes]
rs12239587	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12239922	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239929	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322354	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1322355	0.81[AFR][1000 genomes]
rs1322356	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824645	0.81[AFR][1000 genomes]
rs16824657	0.81[AFR][1000 genomes]
rs16824658	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824663	0.81[AFR][1000 genomes]
rs16824665	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824668	0.81[AFR][1000 genomes]
rs16824669	0.81[AFR][1000 genomes]
rs16824678	0.81[AFR][1000 genomes]
rs16824688	0.81[AFR][1000 genomes]
rs16824692	0.81[AFR][1000 genomes]
rs16824719	0.84[AFR][1000 genomes]
rs16824725	0.84[AFR][1000 genomes]
rs16824726	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824728	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824729	0.84[AFR][1000 genomes]
rs16824732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824736	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824741	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824744	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951512	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951513	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951515	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1951516	0.87[AMR][1000 genomes]
rs55678382	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55975103	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56182901	1.00[AMR][1000 genomes]
rs57103984	0.81[AFR][1000 genomes]
rs57289095	0.81[AFR][1000 genomes]
rs58063730	0.87[AMR][1000 genomes]
rs59787112	0.81[AFR][1000 genomes]
rs59818099	0.93[AMR][1000 genomes]
rs6425008	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664313	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6666206	0.82[AFR][1000 genomes]
rs6666950	0.81[AFR][1000 genomes]
rs6667046	0.83[AFR][1000 genomes]
rs6679893	0.81[AFR][1000 genomes]
rs6689783	0.81[AFR][1000 genomes]
rs6690968	0.81[AFR][1000 genomes]
rs6701167	0.81[AFR][1000 genomes]
rs6703739	0.81[AFR][1000 genomes]
rs73054454	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73054465	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73056300	0.81[AFR][1000 genomes]
rs73058203	0.81[AFR][1000 genomes]
rs73058206	0.81[AFR][1000 genomes]
rs73058209	0.81[AFR][1000 genomes]
rs73058214	0.81[AFR][1000 genomes]
rs73058224	0.81[AFR][1000 genomes]
rs73058243	0.82[AFR][1000 genomes]
rs73058250	0.83[AFR][1000 genomes]
rs73062122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062125	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062132	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062134	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062135	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062140	0.88[AFR][1000 genomes]
rs73062143	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062155	1.00[EUR][1000 genomes]
rs73062157	1.00[EUR][1000 genomes]
rs73062164	1.00[EUR][1000 genomes]
rs7518783	0.81[AFR][1000 genomes]
rs7544887	0.81[AFR][1000 genomes]
rs9628626	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185873400-185881200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:185875600-185895800	Weak transcription	NHDF-Ad	bronchial
3	chr1:185877000-185881000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:185877000-185894200	Weak transcription	Fetal Lung	lung
5	chr1:185877200-185881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:185877800-185904400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr1:185878400-185883200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:185879000-185881800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr1:185880000-185881400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:185880000-185881400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr1:185880000-185883200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:185880200-185881400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr1:185880400-185881600	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr1:185880600-185881600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:185880600-185884200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr1:185880600-185884400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:185880800-185881200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:185880800-185882000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr1:185880800-185882000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr1:185880800-185882800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
21	chr1:185880800-185883600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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