Variant report

Variant	rs6666206
Chromosome Location	chr1:185850254-185850255
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185836059..185838961-chr1:185847676..185850629,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10465478	1.00[EUR][1000 genomes]
rs10465499	1.00[EUR][1000 genomes]
rs12239587	0.88[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12239922	0.90[AFR][1000 genomes]
rs12239929	0.87[YRI][hapmap];0.90[AFR][1000 genomes]
rs1322354	0.88[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1322355	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322356	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13375391	1.00[EUR][1000 genomes]
rs16824368	1.00[EUR][1000 genomes]
rs16824645	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824657	0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824658	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824663	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824665	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824668	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824669	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824673	1.00[EUR][1000 genomes]
rs16824678	0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824688	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824692	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824719	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824725	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824726	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824728	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824732	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824736	0.83[AFR][1000 genomes]
rs16824741	0.82[AFR][1000 genomes]
rs16824744	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951512	0.89[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951513	0.89[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951515	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951516	1.00[EUR][1000 genomes]
rs41533044	1.00[EUR][1000 genomes]
rs55678382	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55943726	0.82[AFR][1000 genomes]
rs55975103	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56182901	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57103984	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57289095	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57454743	1.00[EUR][1000 genomes]
rs58063730	1.00[EUR][1000 genomes]
rs58437418	1.00[EUR][1000 genomes]
rs59787112	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61261990	1.00[EUR][1000 genomes]
rs6425008	0.89[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664313	0.88[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664384	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666950	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6667046	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679622	0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679893	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689494	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689783	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690968	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6701167	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703739	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73054454	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73054465	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73056300	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058203	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058206	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058209	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058214	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058224	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058243	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058250	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062122	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062125	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062132	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062134	0.83[AFR][1000 genomes]
rs73062135	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062140	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062161	1.00[EUR][1000 genomes]
rs73062166	1.00[EUR][1000 genomes]
rs74134212	1.00[EUR][1000 genomes]
rs744737	1.00[EUR][1000 genomes]
rs7518783	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544887	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9628634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185847800-185850400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185848200-185850600	Enhancers	Aorta	Aorta
3	chr1:185848800-185850400	Enhancers	Rectal Mucosa Donor 29	rectum
4	chr1:185848800-185851000	Enhancers	Liver	Liver
5	chr1:185849400-185850600	Enhancers	Fetal Brain Male	brain
6	chr1:185849600-185850400	Enhancers	NHDF-Ad	bronchial
7	chr1:185849600-185850600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:185849800-185850600	Enhancers	Adipose Nuclei	Adipose
9	chr1:185850000-185850600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:185850000-185850600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:185850000-185850600	Enhancers	Sigmoid Colon	Sigmoid Colon

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