Variant report

Variant	rs16824368
Chromosome Location	chr1:185663976-185663977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:185655546..185657231-chr1:185661378..185664178,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs12239587	1.00[EUR][1000 genomes]
rs1322354	1.00[EUR][1000 genomes]
rs1322355	1.00[EUR][1000 genomes]
rs1322356	1.00[EUR][1000 genomes]
rs13375391	1.00[EUR][1000 genomes]
rs16824645	1.00[EUR][1000 genomes]
rs16824657	1.00[EUR][1000 genomes]
rs16824658	1.00[EUR][1000 genomes]
rs16824663	1.00[EUR][1000 genomes]
rs16824665	1.00[EUR][1000 genomes]
rs16824668	1.00[EUR][1000 genomes]
rs16824669	1.00[EUR][1000 genomes]
rs16824673	1.00[EUR][1000 genomes]
rs16824678	1.00[EUR][1000 genomes]
rs16824688	1.00[EUR][1000 genomes]
rs16824692	1.00[EUR][1000 genomes]
rs1951512	1.00[EUR][1000 genomes]
rs55678382	1.00[EUR][1000 genomes]
rs55722516	1.00[EUR][1000 genomes]
rs55975103	1.00[EUR][1000 genomes]
rs56182901	1.00[EUR][1000 genomes]
rs57103984	1.00[EUR][1000 genomes]
rs57289095	1.00[EUR][1000 genomes]
rs58063730	1.00[EUR][1000 genomes]
rs59787112	1.00[EUR][1000 genomes]
rs6425008	1.00[EUR][1000 genomes]
rs6664313	1.00[EUR][1000 genomes]
rs6664384	1.00[EUR][1000 genomes]
rs6666206	1.00[EUR][1000 genomes]
rs6666950	1.00[EUR][1000 genomes]
rs6667046	1.00[EUR][1000 genomes]
rs6679622	1.00[EUR][1000 genomes]
rs6679893	1.00[EUR][1000 genomes]
rs6689494	1.00[EUR][1000 genomes]
rs6689783	1.00[EUR][1000 genomes]
rs6690968	1.00[EUR][1000 genomes]
rs6701167	1.00[EUR][1000 genomes]
rs6703739	1.00[EUR][1000 genomes]
rs73054454	1.00[EUR][1000 genomes]
rs73054465	1.00[EUR][1000 genomes]
rs73056300	1.00[EUR][1000 genomes]
rs73058203	1.00[EUR][1000 genomes]
rs73058206	1.00[EUR][1000 genomes]
rs73058209	1.00[EUR][1000 genomes]
rs73058214	1.00[EUR][1000 genomes]
rs73058224	1.00[EUR][1000 genomes]
rs73058243	1.00[EUR][1000 genomes]
rs744737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7518783	1.00[EUR][1000 genomes]
rs7544887	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv947341	chr1:185651878-185664812	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185662600-185664000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
2	chr1:185662800-185664000	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr1:185663200-185664200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:185663400-185664000	Flanking Active TSS	Duodenum Mucosa	Duodenum
5	chr1:185663400-185664400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:185663600-185664000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:185663600-185664000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr1:185663600-185664000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:185663600-185664000	Enhancers	Fetal Intestine Large	intestine
10	chr1:185663600-185664000	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr1:185663600-185664000	Enhancers	HepG2	liver
12	chr1:185663600-185664000	Enhancers	HUVEC	blood vessel
13	chr1:185663600-185664200	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:185663600-185664200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:185663600-185664200	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr1:185663600-185664400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:185663600-185665000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr1:185663600-185668800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr1:185663600-185669000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:185663800-185664000	Enhancers	Primary hematopoietic stem cells	blood
21	chr1:185663800-185664000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr1:185663800-185664000	Enhancers	Liver	Liver
23	chr1:185663800-185664200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr1:185663800-185664200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr1:185663800-185664200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr1:185663800-185664400	Enhancers	Primary B cells from cord blood	blood
27	chr1:185663800-185664400	Enhancers	Primary T cells from cord blood	blood
28	chr1:185663800-185664400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr1:185663800-185664400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr1:185663800-185664400	Enhancers	Fetal Intestine Small	intestine
31	chr1:185663800-185664600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:185663800-185664600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr1:185663800-185667200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:185663800-185668600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr1:185663800-185668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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