Variant report

Variant	rs16824645
Chromosome Location	chr1:185856188-185856189
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10465478	1.00[EUR][1000 genomes]
rs10465499	1.00[EUR][1000 genomes]
rs12239587	0.84[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12239922	0.89[AFR][1000 genomes]
rs12239929	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs1322354	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1322355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1322356	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13375391	1.00[EUR][1000 genomes]
rs16824368	1.00[EUR][1000 genomes]
rs16824657	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824658	0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824663	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824665	0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824668	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824669	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824673	1.00[EUR][1000 genomes]
rs16824678	0.88[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824688	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824692	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824719	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824725	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824726	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824728	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824729	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16824732	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16824736	0.82[AFR][1000 genomes]
rs16824741	0.81[AFR][1000 genomes]
rs16824744	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951512	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951513	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951515	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1951516	1.00[EUR][1000 genomes]
rs41533044	1.00[EUR][1000 genomes]
rs55678382	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55943726	0.81[AFR][1000 genomes]
rs55975103	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56182901	1.00[EUR][1000 genomes]
rs57103984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57289095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57454743	1.00[EUR][1000 genomes]
rs58063730	1.00[EUR][1000 genomes]
rs58437418	1.00[EUR][1000 genomes]
rs59787112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61261990	1.00[EUR][1000 genomes]
rs6425008	0.85[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664313	0.84[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6664384	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666206	0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6666950	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6667046	0.96[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679622	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6679893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689494	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6690968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6701167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703739	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73054454	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73054465	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73056300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058209	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058243	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73058250	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062122	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062125	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062132	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062134	0.82[AFR][1000 genomes]
rs73062135	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73062140	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73062161	1.00[EUR][1000 genomes]
rs73062166	1.00[EUR][1000 genomes]
rs74134212	1.00[EUR][1000 genomes]
rs744737	1.00[EUR][1000 genomes]
rs7518783	0.95[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7544887	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9628634	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185850400-185863400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:185855800-185856400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:185855800-185856400	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links